BAC Information

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BAC

Clone NameMSMg01-212P09
Chromosome19 (Build37)
Map Location 17,584,438 - 17,584,718
singlet/doubletsinglet
Overlap genePcsk5
Upstream geneGna14, Vps13a, Foxb2, A230083H22Rik, Gcnt1, Rfk
Downstream geneEef1a1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212P09.T7 (MSMg01no212_p09.b1)MSMg01-212P09.TJ (MSMg01no212_p09.g1)
ACCAG394125AG394126
length743728
length of high quality
(start - end)
422 (48 - 469)281 (79 - 359)
definitionCHROMAT_FILE: MSMg01no212_p09.b1 PHD_FILE: MSMg01no212_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:52 2005CHROMAT_FILE: MSMg01no212_p09.g1 PHD_FILE: MSMg01no212_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGGATACCCAGAGCTACATAGTGAGACACTATCTTAAAAAAA
ACAATTATGAGGGTGCTGGAGCACATGGCTCAGTGGTTAAGAGCACTGAC
TGCTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCACCAATCACATGGTGG
CTCACAACCATCCGTAATGAGATCTGATGCCCTCTTCTGGTGTGTCTGAA
GACAGCTACAGTGTACTTACATGTAATAAAAAATAAATTGTAAGGCTGGA
GAAAGCAGAAGTCCTGAGTTCAATTCCTAGCAACCACATGATGGCTCACA
ACCATCTGTAAAGCTACAGTGTATTCATAGACATAAAATAAATAAATAAA
TCTTTAAAAAAATAACAAAAAGGCTTTCCATTCTCACATGTGGGAGGTGG
GAGGGGTGATGTTGTNCNTTCNTTCTTNTTCTTTNNTTTTTTNTTTTTTT
CTTTTTTCTTTCCCTCTTTTCCTCCCCCCCCCCTTTTCTTTTTCTCCTTT
TCTTTTCCCTCTTCGTCTTCTGTTTTTCCTTCCTTTTTTTTGCTCTCCTC
CTATTCCTCTGTTTCTTCCCTTTTGTCTGCTCTGTGTCTTTCTTTGTTTT
AGTTGCTTTTTCTGTTCCCCGTTGTCTTGTCTTCCTTGTTGTCGTCCATT
TTCTCGTGTCGGTTTGTTTTGTGTTGGTGTTTTCAGCGTCTGT
CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGATTCTGAGTATGAAGAAT
GCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGGGTATGTCATCT
TCCTTTGTTACTTACAAAGTTTAAATAGCTGTGTCCTTCATCCCACACCC
TGATGTTGCCATTGATCCAGCAAAAAAAGTCTTGTCATTGAGGTAATTAC
CAATGTCTCCATCACCATCCCTAGTACAGACAACATCACAATGAAGAGAT
GCTAAGGCGGCAATAGTGTCAAGCTTAAGAAAGGATGGCGGTGTCGTCCC
CTGTGATTGTTTTGTATTTGACCCACCCCAGTTTTCAGCAATCATGTATG
AAGGTGCATGACCCTCTGACCCTTCTTTATTAAGTGTCAAATAAAATCAA
ACAAAGAGATGCCTGTGGGCTCTAAGTCACTTGGTGTGTGTAACACAAGA
GCCAGCAGGTAGAGATAGGGAGATCTCCTTTTGTTAAAAGTGAAGCCTAA
GACAATGCTTTGTACTATGGTGATGGTGAAGTCAGGATTCCCATTACTCA
AAGAAAAGCATACATCCTCTCTAGTTCCTAACCCCTTCCTTTCACACCAC
TGGTGAATGAATAGGTGGGGTTGGTTTATAGCACATAACATCAGGAAAAT
TGATGAAAACTGTAAAATAGGAATGCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_p09.g1 MSMg01no212_p09.g1 CHROMAT_FILE:
MSMg01no212_p09.g1 PHD_FILE: MSMg01no212_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:52 2005
         (281 letters)



>mm_chr19_17584238_17584918
          Length = 681

 Score =  513 bits (265), Expect = e-150
 Identities = 277/281 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggattctgagtatgaagaatgcatgccctgtgaggaaggatgtctgggatgcactgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 caggattctgagtatgaagaatgcatgccctgtgaggaaggatgtctgggatgcactgag 422

                                                                       
Query: 61  ggtatgtcatcttcctttgttacttacaaagtttaaatagctgtgtccttcatcccacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggtatgtcatcttcctttgttacttacaaagtttaaatagctgtgtccttcatcccacac 362

                                                                       
Query: 121 cctgatgttgccattgatccagcaaaaaaagtcttgtcattgaggtaattaccaatgtct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 361 cctgatgttgccattgatccagcaaaaaaagtcttgtcattgaggtaattaccagtgtct 302

                                                                       
Query: 181 ccatcaccatccctagtacagacaacatcacaatgaagagatgctaaggcggcaatagtg 240
           ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 301 ccatcaccatctctagtacagacaacatcacaatgaagagatgctaaggcagcaatagtg 242

                                                    
Query: 241 tcaagcttaagaaaggatggcggtgtcgtcccctgtgattg 281
           |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 241 tcaagcttaagaaaggatggcggtgttgtcccctgtgattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)