BAC Information

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BAC

Clone NameMSMg01-215B24
Chromosome19 (Build37)
Map Location 32,668,298 - 32,668,587
singlet/doubletsinglet
Overlap genenone
Upstream genePrkg1, 1810073H04Rik, Asah2, EG668042, Sgms1, 2700046G09Rik, LOC100042138, LOC672490, LOC100042823, Minpp1
Downstream genePapss2, Atad1, Pten, B430203M17Rik, 6530404N21Rik, LOC638381, EG668095, LOC628236, AI747699
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215B24.T7 (MSMg01no215_b24.b1)MSMg01-215B24.TJ (MSMg01no215_b24.g1)
ACCAG395491AG395492
length700700
length of high quality
(start - end)
314 (382 - 695)287 (75 - 361)
definitionCHROMAT_FILE: MSMg01no215_b24.b1 PHD_FILE: MSMg01no215_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:41 2005CHROMAT_FILE: MSMg01no215_b24.g1 PHD_FILE: MSMg01no215_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTGAAACTACCATGGTTCTTTGAAAAGATAAACGTGATTAACAAAT
CCTGAACAAACTAGCATTACCCCAGAATCGCAACTAACAAAATTCATGAT
GAAAAGGACAGGCAGAACAATAAATATTATTGATATATAGGGGATAATCA
AGGAATGCTTTGAGAACCATAATCCCATAAATTAGAAAATGTAGATGAAA
TGGCAACATTTCTGCACATGTATCACCCACCAATATGAAACCTGTGGTTA
TAAACAACTTAAACTGATCTACAATAGGCAACAAGACTGAATCTCCCAAG
TAGAAAGTGTCTTGTACTGTACAGAGCTGGCGCTGAGTTCTACCAGAGCT
GTAAAGATGAGCTATTCCCAGTGCTCCCCATAACATCTCATAAAACAGAG
GGGACGTTACACCGTCAACTCATCTGTCACCCCAGTACTGTAACTGAGAT
ACTGCTCTGGGTTGCTTTCCATTGCTGTGATAAAGTACTCACTTCAGCTT
ACCGCTTTAAGTCCATCATTTGAGGCAAGGGCAGGAACTCCAGACAGGAA
CCTACAGGCAGGAACTGAAGCAGAAGTCACAGAAGAACACTGCTTACTGG
CTGGTTCTCTGTGGCTTGCTCAGGCAGCTGTCTCACACGACTCAGGACTN

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAACTGCCTTGCCCCCTAGTGGTTGTA
ATTCGTAAGTGTTTGAAGAAAAAAAAACTGAATTGTTGAAACTCCTTACA
TATGTAGCATTCCATTCATTGAGAAGTCCTGCCCTGTAGTTTCTGAACAG
GCTTCCCAGATACAGGCAACGGCAAGGCGAGAAATAGATCCTCTTTAATC
TGGTCATTTCAACTACTGCATGTTTGGAACCAGGAAAAAAAAAAAGATAA
AGGCATGCCTTAATTGTTTTACTTTGACTTAAAGCATATACGTGTCCAAA
ATATTTTGATGCTTTTTTTATGGCCTCCCACCCCGCCATGGGGTCTTCTG
ATGGGAATTTACAGACCAACCCCCATTAAATATGAATAATAATTTCCGGC
TTGGAGTCTTGTAAACTGGAGCTTATAATTAAGAGCATTTGGACCCGGAA
AGGTGGATCTGCACCTAAGAGTGCTTGCTGCTGTTCAAGAAGGGTGGCCT
TTAGTTCCCAGTGCCCATGTCAGGTGATCTCCTGTGACTCCAGCTCCAGG
GAATCCATGACCTCCTCCCATCTCATGGGGCAGTGTCCCCACGTCACTCC
ATATGTAAGTAAGCTAATACTAATAAAAGATAGTTTTAAAAATTAAAAAC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_b24.g1 MSMg01no215_b24.g1 CHROMAT_FILE:
MSMg01no215_b24.g1 PHD_FILE: MSMg01no215_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:41 2005
         (287 letters)



>mm_chr19_32668098_32668787
          Length = 690

 Score =  542 bits (280), Expect = e-158
 Identities = 287/290 (98%), Gaps = 3/290 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactgccttgccccctagtggttgtaattcgtaagtgtttgaag--aaaaaaaaactgaa 58
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 490 aactgccttgccccctagtggttgtaattcgtaagtgtttgaagaaaaaaaaaaactgaa 431

                                                                       
Query: 59  ttgttgaaactccttacatatgtagcattccattcattgagaagtcctgccctgtagttt 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ttgttgaaactccttacatatgtagcattccattcattgagaagtcctgccctgtagttt 371

                                                                       
Query: 119 ctgaacaggcttcccagatacaggcaacggcaaggcgagaaatagatcctctttaatctg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ctgaacaggcttcccagatacaggcaacggcaaggcgagaaatagatcctctttaatctg 311

                                                                       
Query: 179 gtcatttcaactactgcatgtttggaaccagg-aaaaaaaaaaagataaaggcatgcctt 237
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 310 gtcatttcaactactgcatgtttggaaccaggaaaaaaaaaaaagataaaggcatgcctt 251

                                                             
Query: 238 aattgttttactttgacttaaagcatatacgtgtccaaaatattttgatg 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aattgttttactttgacttaaagcatatacgtgtccaaaatattttgatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 690
Length adjustment: 9
Effective length of query: 278
Effective length of database: 681
Effective search space:   189318
Effective search space used:   189318
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)