Query= MSMg01no231_g06.b1 MSMg01no231_g06.b1 CHROMAT_FILE:
MSMg01no231_g06.b1 PHD_FILE: MSMg01no231_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:40 2005
(705 letters)
>mm_chr19_33105724_33106829
Length = 1106
Score = 754 bits (390), Expect = 0.0
Identities = 426/438 (97%), Gaps = 1/438 (0%)
Strand = Plus / Minus
Query: 269 ctgaggaaagccggggtagccagccagtaaagagcatgcctccatggcctctgtttcaga 328
||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 1106 ctgaggaaagctgggatagccagccagtaaagaacatgcctccatggcctctgcttcaga 1047
Query: 329 tcctccctccctccctccctccctctgggcttcccatcctgatggaattgtaagctgtga 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 tcctccctccctccctccctccctctgggcttcccatcctgatggaattgtaagctgtga 987
Query: 389 ggtaaactaagctgctccctcctccgagttgccttcagtcatggtgtccttatcacagca 448
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 ggtaaactaagcccctccctcctccgagttgccttcagtcatggtgtccttatcacagca 927
Query: 449 acagaaagcaagctgaggcaatgctcaagagcattgttcaataacgaaaatggactttcc 508
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 926 acagaaagcaagctgaggcaatgctcaagagcactgttcaataacaaaaatggactttcc 867
Query: 509 gatgcacatccagacacaatcaatgagagtaggagctagaccttaacatctgtgagcccc 568
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 866 aatgcacatccagccacaatcaatgagattaggagctagaccttaacatctgtgagcccc 807
Query: 569 cacgaaagggatgctgcgtggggaccaccttaaaactctactcgaaactacaagtgagat 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 cacgaaagggatgctgcgtggggaccaccttaaaactctactcgaaactacaagtgagat 747
Query: 629 cctgaaacctaccaaactacagagctctcaaagaattgttaaaagactacaagtgcaaac 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 cctgaaacctaccaaactacagagctctcaaagaattgttaaaagactacaagtgcaaac 687
Query: 689 a-ttttaaataaaggtca 705
| ||||||||||||||||
Sbjct: 686 atttttaaataaaggtca 669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1106
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1096
Effective search space: 761720
Effective search space used: 761720
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no231_g06.g1 MSMg01no231_g06.g1 CHROMAT_FILE:
MSMg01no231_g06.g1 PHD_FILE: MSMg01no231_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:40 2005
(289 letters)
>mm_chr19_32960428_32961118
Length = 691
Score = 536 bits (277), Expect = e-157
Identities = 287/291 (98%), Gaps = 2/291 (0%)
Strand = Plus / Plus
Query: 1 cagttgggtgtttctttcatctgattcaaacgtagccctgggccacagatgcagccttat 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 cagttgggtgtttctttcatctgattcaaatgtagccctgggccacagatgcagccttat 260
Query: 61 at--ctgggcaacattgaattctcaataggaagggctgttctcgtaagggggtttgctgt 118
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatctgggcaacattgaattctcaataggaagggctgttctcgtaagggggtttgctgt 320
Query: 119 ctttggagttaaggaatgaagtgttggtgagaagatctgttattatgtgcttttctctcg 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 ctttggagttaaggaatgaagtgttggtgagaagatctgttattatgtgcttttctcttg 380
Query: 179 gcagaacacttctaaggggctctgttcctgaaggcggctctgaggctatgccttgggagc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagaacacttctaaggggctctgttcctgaaggcggctctgaggctatgccttgggagc 440
Query: 239 ttgggcgtttgtcttcttggctaccatcttctgaatgtgctagacattctg 289
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgggcgtttgtcttcttggctaccatcttctgaatgtgctagacattctg 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 691
Length adjustment: 9
Effective length of query: 280
Effective length of database: 682
Effective search space: 190960
Effective search space used: 190960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
