BAC Information

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BAC

Clone NameMSMg01-231G17
Chromosome19 (Build37)
Map Location 49,273,521 - 49,296,728
singlet/doubletdoublet
Overlap genenone
Upstream geneSorcs3, LOC100042896
Downstream geneLOC629448, Siah1-ps1, EG433251, Sorcs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231G17.T7 (MSMg01no231_g17.b1)MSMg01-231G17.TJ (MSMg01no231_g17.g1)
ACCAG398240AG398241
length745746
length of high quality
(start - end)
700 (46 - 745)301 (77 - 377)
definitionCHROMAT_FILE: MSMg01no231_g17.b1 PHD_FILE: MSMg01no231_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:42 2005CHROMAT_FILE: MSMg01no231_g17.g1 PHD_FILE: MSMg01no231_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,273,521 - 49,274,218)(49,296,428 - 49,296,728)
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AAATGAATTCTCCTTCCTCTCATATGTAACTAAAAATCACTGCCAGACAA
ATTTCATGCATCAATGATTATAACTCTGAAATGAGACACGTGAGGTTTTC
ATTCTTCTTTCCCTTTGCTCTGTCCCAGGGTCTCTCTAGCTTTCCTTATT
CCATACCATGCTCTGTGTGGGCTGCTCTGTGTTCCCAGTTCAACCAGAGT
CAGTGTCCAACCATAAAAGCAAAAACTGCATTAAAGACTTTGAACAAACA
AGACCTAAAACATTGATTTGGTTACACAGGTGATTTAAAGAATAAATGAG
CCATGTAGAGATACTCAAAGCAAGTCAGGAATTTCTAATAGCAGGACTCA
GAAATCATTTGTTCAAGATCCCTGTGGGTTTAAGCTATAGCATGCCTCCC
ATCTTTCCATAATACCATAAGGTACATAAAACCAAGAAGTTGACTACAAG
GACTCTAGCTTTTTATTCCTGTCCTTACCTACTGGTCTTCCTGTTGGTAA
TGGGAAGCATTAATCTGTCCCTTGAACTGGAACCCCGCATGTTCTTGATC
TCATTTCAAATCATATCTAGTAAAATATAATCCTAAATCCTATTTTGAGT
TATTTCTAAATCTGAAATCTGAATTTTTATAGTCACATGCCTGGTATAAA
TCAGCATCATTTTTCACTGTGCAGCAAGATAAGATGGAATTTTCA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACATTCTTTTTAATACAAGTTTAA
AATTACATTAAATATTATAAATAGTTACTCATACTCAAAATTGTATCACT
AGTGAACTTATTAAACTGCTTTCACTGACATCATTTTGTATAAGCATGAG
TAATGGCTAAAATATATTATTTATTTTTTGTTAAATGAATGCATGGTGAT
ACTCTGTTGTAGACAATTTGATAGTTGTCAAAGGTTATACATCCCATAAT
GTTTGACATCAGATAAAAGTGATACTTGTCATTATTAAATGACAAAGCAT
CAGCTCTTCCTTTCTCTGTGTTACATGTTCTCTGAGAAAAGATACAACAA
AATCACAAGTGTGTTTATACTACGAAACAAAATTGCAGGTTGCGTTTCTC
ATTATTTTGCCTTTTTGTCTTTCTATTCAAAAATTTTTAATTTTATATTT
ATTACTATTCAATAAACCCTCCCATATGTGTCTCCTTGCCCTCTGTAAAA
TTCATAGCTTTTATCTTCTGTTACATTAACTGTTATTATTGACATGTGTA
TACACACACACACACACACACACATTCCTAAATGTGACCATCTAAGTCAG
GATAATTCACACACATGTGTGCTTTCACAACTATTTTATATTGGATAAGC
AATTGTAATGTTCTTCCCTGGGGAATATTATTCTCCCTGTTCTCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_g17.b1 MSMg01no231_g17.b1 CHROMAT_FILE:
MSMg01no231_g17.b1 PHD_FILE: MSMg01no231_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:42 2005
         (700 letters)



>mm_chr19_49273319_49274418
          Length = 1100

 Score = 1319 bits (682), Expect = 0.0
 Identities = 694/698 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   cggaaatgaattctccttcctctcatatgtaactaaaaatcactgccagacaaatttcat 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cggaaatgaattctccttcctctcatatgtaactaaaaatcactgccagacaaatttcat 262

                                                                       
Query: 63  gcatcaatgattataactctgaaatgagacacgtgaggttttcattcttctttccctttg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gcatcaatgattataactctgaaatgagacacgtgaggttttcattcttctttccctttg 322

                                                                       
Query: 123 ctctgtcccagggtctctctagctttccttattccataccatgctctgtgtgggctgctc 182
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 323 ctctgtcccagggtctctctagctttccttattccataccatgctctgtgtgtgctgctc 382

                                                                       
Query: 183 tgtgttcccagttcaaccagagtcagtgtccaaccataaaagcaaaaactgcattaaaga 242
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgtgttcccagctcaaccagagtcagtgtccaaccataaaagcaaaaactgcattaaaga 442

                                                                       
Query: 243 ctttgaacaaacaagacctaaaacattgatttggttacacaggtgatttaaagaataaat 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctttgaacaaacaagacctaaaacattgatttggttacacaggtgatttaaagaataaat 502

                                                                       
Query: 303 gagccatgtagagatactcaaagcaagtcaggaatttctaatagcaggactcagaaatca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gagccatgtagagatactcaaagcaagtcaggaatttctaatagcaggactcagaaatca 562

                                                                       
Query: 363 tttgttcaagatccctgtgggtttaagctatagcatgcctcccatctttccataatacca 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tttgttcaagatccctgtgggtttaagctatagcatgcctcccatctttccataatacca 622

                                                                       
Query: 423 taaggtacataaaaccaagaagttgactacaaggactctagctttttattcctgtcctta 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 taaggtacataaaaccaagaagttgactacaaggactctagctttttattcctgtcctta 682

                                                                       
Query: 483 cctactggtcttcctgttggtaatgggaagcattaatctgtcccttgaactggaaccccg 542
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 683 cctactggtcttcctgttggtaatgggaagcattaatctgtcgcttgaactggaaccccg 742

                                                                       
Query: 543 catgttcttgatctcatttcaaatcatatctagtaaaatataatcctaaatcctattttg 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 catgttcttgatctcatttcaaatcatatctagtaaaatataatcctaaatcctattttg 802

                                                                       
Query: 603 agttatttctaaatctgaaatctgaatttttatagtcacatgcctggtataaatcagcat 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 agttatttctaaatctgaaatctgaatttttatagtcacatgcctggtataaatcagcat 862

                                                 
Query: 663 catttttcactgtgcagcaagataagatggaattttca 700
           |||||||||||||||||||||| |||||||||||||||
Sbjct: 863 catttttcactgtgcagcaagaaaagatggaattttca 900


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space:   752100
Effective search space used:   752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no231_g17.g1 MSMg01no231_g17.g1 CHROMAT_FILE:
MSMg01no231_g17.g1 PHD_FILE: MSMg01no231_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:42 2005
         (301 letters)



>mm_chr19_49296075_49296775
          Length = 701

 Score =  582 bits (301), Expect = e-171
 Identities = 301/301 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acattctttttaatacaagtttaaaattacattaaatattataaatagttactcatactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 acattctttttaatacaagtttaaaattacattaaatattataaatagttactcatactc 595

                                                                       
Query: 61  aaaattgtatcactagtgaacttattaaactgctttcactgacatcattttgtataagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aaaattgtatcactagtgaacttattaaactgctttcactgacatcattttgtataagca 535

                                                                       
Query: 121 tgagtaatggctaaaatatattatttattttttgttaaatgaatgcatggtgatactctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tgagtaatggctaaaatatattatttattttttgttaaatgaatgcatggtgatactctg 475

                                                                       
Query: 181 ttgtagacaatttgatagttgtcaaaggttatacatcccataatgtttgacatcagataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ttgtagacaatttgatagttgtcaaaggttatacatcccataatgtttgacatcagataa 415

                                                                       
Query: 241 aagtgatacttgtcattattaaatgacaaagcatcagctcttcctttctctgtgttacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aagtgatacttgtcattattaaatgacaaagcatcagctcttcctttctctgtgttacat 355

            
Query: 301 g 301
           |
Sbjct: 354 g 354


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)