BAC Information

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BAC

Clone NameMSMg01-231P22
Chromosome19 (Build37)
Map Location 52,063,893 - 52,064,181
singlet/doubletsinglet
Overlap geneLOC100042936
Upstream geneLOC100042924, LOC100042928, LOC668536
Downstream geneIns1, LOC100043450
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231P22.T7 (MSMg01no231_p22.b1)MSMg01-231P22.TJ (MSMg01no231_p22.g1)
ACCAG398643AG398644
length724726
length of high quality
(start - end)
289 (436 - 724)292 (76 - 367)
definitionCHROMAT_FILE: MSMg01no231_p22.b1 PHD_FILE: MSMg01no231_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:23 2005CHROMAT_FILE: MSMg01no231_p22.g1 PHD_FILE: MSMg01no231_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTAGGTTTTCATTCATTCAATCATTCATTCATTCACATTTAAAA
AATAAGACAAAATAAAAGACAAGATAACAACAAAAACTATCACATCATAG
TTGAACAAGATAAACCAACAAAAGGAATAAGGTCTAAGCAAAGACAAAAC
AATCAAAGACCTACTCATTCCACATTCAGGTGTGCCTACTGGCTTGCTCA
TCCAGCTAAACTTCAGCTACCATTCTATATCTCCCAGGACCACTTACCCC
GGGGCAGTAGTGCCCATAGTAGGCTTGTCTCTCCCACATCAATCCTAAAT
CAAGAAAATGACCCATATTTCTGCTTACCGGCCCCCAAAATAAAGACATT
TTCTCGGTTCAGGTTTTCTCCTACACGTGTCTAGGTTTGTGACAACTGAC
CAATGCCAACCAGCACATCATGTACTTTACTACTTCAGATATGTAAAACC
TCCCAAAGTACATGACCCAGGAGGTGATGTGCCCCTCATGTCAGAGAGGG
AAACCTAAGGTTCACAGAGCGTAAGTATTGGGGCAGACGGAAGTGGTACC
CTTAATATTTTAATTATGGTTCTCTGATATTTTCTCACTACCATCTGCTT
TTTTTCTTCCACAGCTGTTATCATATAACTGTGGAAAGTTCTTTACTCTG
TGAGGACATTCTAGAGGACTGCCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTACTACCTCCTATTTAAGGCAGA
GAAAAGTTCCTCTGGTTAAATTTAGGGACAACAGTACTCTGTGAGTATAA
ACCTAAATATGAAAAGGCAATTTGACATGTCACTTAAAAAGATAATGGGA
GTAGTTCTGTGCTACGTCTTATGTTTTCCCAAAATCCTTGGGCTTTTAAC
TAGGTTAACAATACCAGACATTCAACCCTTCAAACACAATCTAATGGACT
GATTTTTCCATAGTAGCTATGCCTCTGTTACTCCAATGGGCACATCTTTC
CAGGCAGGCCAGGTTTTATTTTGGGTACCCTCCCGCTGTGTAAACTATTG
ATAGCCTTTCCCCCGAGGGACATACACAGAACCTTCTGTATTACAGAAGT
CAGCCAGCCAGAAAGAATTCAGTTTTGTTCCAGCCTGATTTCTCTACATT
CTCCAACTGAAATGTATTGTGTGTTCAACAACAGGACCTTACTTTATACT
TAGTGGCATTCCCAGCTTTCATGTTTCGGCTGAGGATCAAATTTGGTCTT
TACTCTCATGTAGCAGACACCTTACCCAGTGAGCCATTACCCTTGCCCCA
GAGGAGAGATTTTGAANAATAATAGTTTTTCTTTACTCTGTCCCAGAAAG
CTTCAGTGAGTTTATTATGGCACAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_p22.b1 MSMg01no231_p22.b1 CHROMAT_FILE:
MSMg01no231_p22.b1 PHD_FILE: MSMg01no231_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:23 2005
         (289 letters)



>mm_chr19_52063693_52064381
          Length = 689

 Score =  474 bits (245), Expect = e-138
 Identities = 278/289 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtgacaactgaccaatgccaaccagcacatcatgtactttactacttcagatatgta 60
           |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtgacaactgaccaacgacaaccagcacatcatgtactttactacttcagatatgta 260

                                                                       
Query: 61  aaacctcccaaagtacatgacccaggaggtgatgtgcccctcatgtcagagagggaaacc 120
           || ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 261 aaccctcccaaagtacatgacccaggaggtgatgtgcccctcatgtcacagaggggaacc 320

                                                                       
Query: 121 taaggttcacagagcgtaagtattggggcagacggaagtggtacccttaatattttaatt 180
           ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 321 taaggttcacagagcgtaagtattgggacagatggaagtggtacccttaatattttaatt 380

                                                                       
Query: 181 atggttctctgatattttctcactaccatctgctttttttcttccacagctgttatcata 240
           |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 atggttttctgatattttctcactatcatctgctttttttcttccacagctgttatcata 440

                                                            
Query: 241 taactgtggaaagttctttactctgtgaggacattctagaggactgcct 289
           ||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 441 taactgtggaaagatctttactctgtgaggtcattctagaggactgcct 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)