Query= MSMg01no232_k09.b1 MSMg01no232_k09.b1 CHROMAT_FILE:
MSMg01no232_k09.b1 PHD_FILE: MSMg01no232_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:11 2005
(308 letters)
>mm_chr19_22468754_22469461
Length = 708
Score = 580 bits (300), Expect = e-170
Identities = 303/304 (99%)
Strand = Plus / Minus
Query: 5 gaattcatccatcttccttggagcatgatgccctccacaatggattccaaattcagttca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gaattcatccatcttccttggagcatgatgccctccacaatggattccaaattcagttca 449
Query: 65 tctgaaaagaagtttgacctacccataattttatagggcatgggtcatggcctgacccca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tctgaaaagaagtttgacctacccataattttatagggcatgggtcatggcctgacccca 389
Query: 125 tttgaagaaaaatggctatactttgtgaggctatatacttgaaaggaatgttagtgtaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tttgaagaaaaatggctatactttgtgaggctatatacttgaaaggaatgttagtgtaat 329
Query: 185 gcctttatcctttttgaaattccattacagggtactccaaggccaaattaatttctggaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gcctttatcctttttgaaattccattacagggtactccaaggccaaattaatttctggaa 269
Query: 245 atgtcttattggatatcagggaaagcaggcagagtgatcgtggctgttactgattctgta 304
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 268 atgtcttattggatatcagggaaagcaggcagagtgagcgtggctgttactgattctgta 209
Query: 305 ggaa 308
||||
Sbjct: 208 ggaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space: 209001
Effective search space used: 209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no232_k09.g1 MSMg01no232_k09.g1 CHROMAT_FILE:
MSMg01no232_k09.g1 PHD_FILE: MSMg01no232_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:11 2005
(282 letters)
>mm_chr19_22329481_22330161
Length = 681
Score = 499 bits (258), Expect = e-146
Identities = 276/282 (97%), Gaps = 1/282 (0%)
Strand = Plus / Plus
Query: 1 tttcactggacaatggaggggggacacaaaataacatacatgagatcataggataaagtg 60
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 tttcactggacaatgga-gggggacacaaaataacatacacgagatcataggataaagtg 259
Query: 61 tggcaagaaaatgaaagaggaaggggacttctgattctgagagattggatacatttagca 120
|||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 260 tggcaagaaaatgagaggggaaggggacttctgattctgagagattggatatatttagca 319
Query: 121 actggtacatttgagggtagagctgcttcttataaaaatccaatctgacaaaggtgaaag 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 320 actggtacatttgagggtagagctgcttcttatgaaaatccaatctgacaaaggtgaaag 379
Query: 181 actctgactgcaatcatgctgtgggccagaaggcttgatgaacagaaaccaccaggttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 actctgactgcaatcatgctgtgggccagaaggcttgatgaacagaaaccaccaggttta 439
Query: 241 agttattagaaaacaaaaccaggccagaggaaacgagaaccg 282
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agttattagaaaacaaaaccaggccagaggaaacgagaaccg 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 681
Length adjustment: 9
Effective length of query: 273
Effective length of database: 672
Effective search space: 183456
Effective search space used: 183456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
