BAC Information

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BAC

Clone NameMSMg01-233C17
Chromosome19 (Build37)
Map Location 60,025,857 - 60,026,514
singlet/doubletsinglet
Overlap genenone
Upstream gene6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2, Rab11fip2, LOC100043087
Downstream geneLOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik, Prlhr, 2700078E11Rik, Nanos1, Eif3s10, 1810055E12Rik, Sfxn4, Prdx3, Gprk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233C17.T7 (MSMg01no233_c17.b1)MSMg01-233C17.TJ (MSMg01no233_c17.g1)
ACCAG399455AG399456
length756751
length of high quality
(start - end)
234 (130 - 363)658 (77 - 734)
definitionCHROMAT_FILE: MSMg01no233_c17.b1 PHD_FILE: MSMg01no233_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:50 2005CHROMAT_FILE: MSMg01no233_c17.g1 PHD_FILE: MSMg01no233_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGGTGTAATTTTTAGGGTCACATATATATACTATCATATCATC
TGCAAAAAGTGATATTTTGTTTTCCCACTTTCCAATTTGTATCCCCTTGA
TCTTCTTTTGTTGTCGAATTGCTCTGGCTAGGACTTCAAGTACAATGTTG
AATAGGTAGCGAGAAAGTGGGCAGCCTTGTCTAGTCCCTGATTTTAGTGG
GATTGCTTCCAGCTTCTCACCATTTACTTTGATGTTGGCTACTGGTTTGC
TGTAGATTGCTTTTATCATGTTTAGGTGTGGGCCTTGAATTCCTGATCTT
TCCAAGACTTTTATCTTTTTTGGCCGCCCCACCTTGTCAAATGCTTTCTC
CGAGTCTAAGGAGATGATCATGCGGTTTATAAAAATGAGTTTGTTTATAT
AATGGATTACGTTGATAGATTTCCGTATATTGTACCATCCCCGCATCCCT
GGGATGAAGCCTACTTGGTCATGATGGATGTGTTCTTGGATTTGGTTTGC
AAGGATTTTATTGAGTATTTTTGCATCGATATTCATAAGGGAAATTGGTC
TGAAGTTCTCTATCTTTGTTGGGTCTTTCTGTGGTTTAGGTATCAGAGTA
ATTGTGGCTTCATAGAATGAGTTGGCTAGAGGACCTTCTGCTTCTATTTT
GTGTGATAGTTTTGTGAATAACTGGTATTAGATTCTCCTTGTAAGGCTTA
TTTATT
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATGTAAGATCCAGTCTTTTAAAA
AGGGGTGGGGCAGAGAATACAATGGACCAAGTCTAGACATTGAGGGTGGT
TAAAGCTTGCTAATCTGCATGGCCATATCCAGCAACCACAACCAGGGCCA
GGAGTGGCTAATAGCACAAAAGACCTCTGTATGGTGCAGACCACATCAGA
TCCTTCTCTAGGATCTTTAGTTAATACAGGTAGCCTGTTTTTAGACCTCA
TCTTCTTGGAAGAAATGACAGGTACTCTGAGGTGAGTTTCAATGTTGTTG
CGCCTCTTTGTGCACTTAGGATTGCATTGCACCAGGAAACTATTCTTTCA
AATTGTACTTAAATTGTGTTTAAATATGCTGGCAGTAAACCTCTGGCATC
AGACTCCCAAAGTTTGGTCTGGCGCTGACTAAGTTGGGCTGAACTGAATG
TTCCTTCTTGCCTCTTTGTGGAGCATTTCCCTGCTGGCCATGACACTGGC
AAGGACCCCCACAGATTGGCATAAAGGGTACTTCAGGCTGGGACCTGAAC
AAAGACTATGATGGGATTCCTTTTACCTGTGACTTGGTTTGTCAGGGCAA
CAATGGGGATGGCATCTGTTGGGCTTTTCCCTGAGCCTCCCTCAGCTTCA
GCCCTGACGTGAATCTTAGTTTTTGTTCCCTGGAGGATAAGGTGAAGGAA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_c17.g1 MSMg01no233_c17.g1 CHROMAT_FILE:
MSMg01no233_c17.g1 PHD_FILE: MSMg01no233_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:50 2005
         (658 letters)



>mm_chr19_60025657_60026714
          Length = 1058

 Score = 1257 bits (650), Expect = 0.0
 Identities = 656/658 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgtaagatccagtcttttaaaaaggggtggggcagagaatacaatggaccaagtctag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 201 aatgtaagatccagtcttttaaaaaggggtggggcagagaatacaatggataaagtctag 260

                                                                       
Query: 61  acattgagggtggttaaagcttgctaatctgcatggccatatccagcaaccacaaccagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acattgagggtggttaaagcttgctaatctgcatggccatatccagcaaccacaaccagg 320

                                                                       
Query: 121 gccaggagtggctaatagcacaaaagacctctgtatggtgcagaccacatcagatccttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccaggagtggctaatagcacaaaagacctctgtatggtgcagaccacatcagatccttc 380

                                                                       
Query: 181 tctaggatctttagttaatacaggtagcctgtttttagacctcatcttcttggaagaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctaggatctttagttaatacaggtagcctgtttttagacctcatcttcttggaagaaat 440

                                                                       
Query: 241 gacaggtactctgaggtgagtttcaatgttgttgcgcctctttgtgcacttaggattgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacaggtactctgaggtgagtttcaatgttgttgcgcctctttgtgcacttaggattgca 500

                                                                       
Query: 301 ttgcaccaggaaactattctttcaaattgtacttaaattgtgtttaaatatgctggcagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgcaccaggaaactattctttcaaattgtacttaaattgtgtttaaatatgctggcagt 560

                                                                       
Query: 361 aaacctctggcatcagactcccaaagtttggtctggcgctgactaagttgggctgaactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaacctctggcatcagactcccaaagtttggtctggcgctgactaagttgggctgaactg 620

                                                                       
Query: 421 aatgttccttcttgcctctttgtggagcatttccctgctggccatgacactggcaaggac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatgttccttcttgcctctttgtggagcatttccctgctggccatgacactggcaaggac 680

                                                                       
Query: 481 ccccacagattggcataaagggtacttcaggctgggacctgaacaaagactatgatggga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccccacagattggcataaagggtacttcaggctgggacctgaacaaagactatgatggga 740

                                                                       
Query: 541 ttccttttacctgtgacttggtttgtcagggcaacaatggggatggcatctgttgggctt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttccttttacctgtgacttggtttgtcagggcaacaatggggatggcatctgttgggctt 800

                                                                     
Query: 601 ttccctgagcctccctcagcttcagccctgacgtgaatcttagtttttgttccctgga 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttccctgagcctccctcagcttcagccctgacgtgaatcttagtttttgttccctgga 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)