Query= MSMg01no234_e10.b1 MSMg01no234_e10.b1 CHROMAT_FILE:
MSMg01no234_e10.b1 PHD_FILE: MSMg01no234_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:13 2005
(227 letters)
>mm_chr19_37720507_37721132
Length = 626
Score = 366 bits (189), Expect = e-106
Identities = 217/233 (93%), Gaps = 13/233 (5%)
Strand = Plus / Minus
Query: 1 cgctgtatcttctaagtgcaaagtaccacctaaatatgaaggatcaattaacagatggcc 60
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 426 cgctgtatcttctaagtgcaaagtacctcctaaatatgaaggatcagttaacagatggcc 367
Query: 61 tcagcgctctgcactctccatttgcctgaacatttctggcctctcattcttagtaggatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tcagcgctctgcactctccatttgcctgaacatttctggcctctcattcttagtaggatt 307
Query: 121 atctgggaaatcctaaactctaaatcctgtgttttaggggaaattctgaggcatcttgct 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 306 atctgggaaatcctaaactct-aatcctgtgttttaggggaaattctgaggcatcttgct 248
Query: 181 aatcaaat------gtttttttccaaactggaactgagagtagagccagcctg 227
|||||||| | |||||||||||||||||||| |||||||||||
Sbjct: 247 aatcaaatggcagag------tccaaactggaactgagagtggagccagcctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 626
Length adjustment: 9
Effective length of query: 218
Effective length of database: 617
Effective search space: 134506
Effective search space used: 134506
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no234_e10.g1 MSMg01no234_e10.g1 CHROMAT_FILE:
MSMg01no234_e10.g1 PHD_FILE: MSMg01no234_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:13 2005
(283 letters)
>mm_chr19_37628105_37628787
Length = 683
Score = 489 bits (253), Expect = e-143
Identities = 276/285 (96%), Gaps = 4/285 (1%)
Strand = Plus / Plus
Query: 1 actagaattctcttccatcagctttctgagtgccgagattacaaagattggccaccaact 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actagagttctcttccatcagctttctgagtgccgagattacaaagattggccaccaact 260
Query: 61 ctggaaaaaaacactttcaaaacacacctgtgttctctgtcactggttttcctagtatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggaaaaaaacactttcaaaacacacctgtgttctctgtcactggttttcctagtatgg 320
Query: 121 ttttaactactggttacagtttcaacttttagccagtgaatatgtttcacttcgaaacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttaactactggttacagtttcaacttttagccagtgaatatgtttcacttcgaaacta 380
Query: 181 ctggggcagtattgtga--agctactagtgaagctcacaacacacagccttctgtattta 238
|||||||||||||| | || |||| |||||||||||||||||||||||||||| |||
Sbjct: 381 ctggggcagtattgccatcag--actaatgaagctcacaacacacagccttctgtagtta 438
Query: 239 caagcatcttttgcacacgttcataaagtggagcaaactgaaagt 283
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 caagcatcttttgcacacgttcataaagtggagcaaactgaaagt 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
