Query= MSMg01no235_e21.b1 MSMg01no235_e21.b1 CHROMAT_FILE:
MSMg01no235_e21.b1 PHD_FILE: MSMg01no235_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:36 2005
(563 letters)
>mm_chr19_12038875_12039837
Length = 963
Score = 965 bits (499), Expect = 0.0
Identities = 544/559 (97%), Gaps = 2/559 (0%)
Strand = Plus / Minus
Query: 4 ggaattccctccttctcaattgagacttgcagatggccttaataaagagagatggatggt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 ggaattccctccttctcaattgagacttgcagatggccttaataaagagagatggatggt 702
Query: 64 tcctggggctcctagggattccgttttcatatcctgcttccggaagaacccagagagagc 123
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tcctgggtctcctagggattccgttttcatatcctgcttccggaagaacccagagagagc 642
Query: 124 ttcctcggcccactcctggactcacgactcctccaatcctcaccccattccctttcctgg 183
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ttcctcggccccctcctggactcacgactcctccaatcctcaccccattccctttcctgg 582
Query: 184 tctaccctctgtctcttcactctagattctcatacacttctattaattctgaccatctag 243
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 581 tctaccctctgtctcttcactctagattctaatacacttctattaattctgaccatctag 522
Query: 244 ttgccgacctcatttatggggagaatagattggcaaagacctactacctacctttatatc 303
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ttgccgaccttatttacggggagaatagattggcaaagacctactacctacctttatatc 462
Query: 304 tcttttccaaatctaaaggcccttgccaggcttagtggggtaaaaacacaattaattctc 363
||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||
Sbjct: 461 tcttttccaaatctaaaggcccttgttaggtttagtgtggtaaaaacacaattaattctc 402
Query: 364 ttgtttattgctagggttttgttttgaactgggtgttgaatgattagatttgatcagctt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ttgtttattgctagggttttgttttgaactgggtgttgaatgattagatttgatcagctt 342
Query: 424 aattacagctgtgttagaggtcacaaatttcagtaactagtccagcattgagctgttgtg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aattacagctgtgttagaggtcacaaatttcagtaactagtccagcattgagctgttgtg 282
Query: 484 aactattattacaaaaatagcccaaacctgcacttcggtgga-tctaacacctattacag 542
|||||||||||||||||||||| ||||||||| || || ||| |||||||||||||||||
Sbjct: 281 aactattattacaaaaatagccaaaacctgcattttgg-ggaatctaacacctattacag 223
Query: 543 tgtatcagtttttgacctg 561
|||| ||||||||||||||
Sbjct: 222 tgtagcagtttttgacctg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_e21.g1 MSMg01no235_e21.g1 CHROMAT_FILE:
MSMg01no235_e21.g1 PHD_FILE: MSMg01no235_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:36 2005
(278 letters)
>mm_chr19_11995122_11995801
Length = 680
Score = 507 bits (262), Expect = e-148
Identities = 275/280 (98%), Gaps = 2/280 (0%)
Strand = Plus / Plus
Query: 1 atctgggatggatctgaagttctgaggcgaatccgtggaccactacttgctcaggtatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctgggatggatctgaagttctgaggcgaatccgtggaccactacttgctcaggtatta 260
Query: 61 aacattcctctttatgtagaatgactcatagctacagataagttggctcctgttgtcatc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 aacattcctctttatgtagaatgactcatagctacagataagttggctcctgttttcatc 320
Query: 121 ctgttcttactgtaatcgtatacaagtatgcatcatccaccagggtcaccgtgag--cta 178
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 321 ctgttcttactgtaatcgtatacaagtatgcatcatccaccagggtcaccttgactacta 380
Query: 179 gcgctcctttcctcagcctcaggttttaaaggctgaaagggggttgctagaactcacaga 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcgctcctttcctcagcctcaggttttaaaggctgaaagggggttgctagaactcacaga 440
Query: 239 tgtcagtgtatgattttagttagttaaaaatctagccaaa 278
||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtcagtgtatgattttagttagttaaaaatctagccaaa 480
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 680
Length adjustment: 9
Effective length of query: 269
Effective length of database: 671
Effective search space: 180499
Effective search space used: 180499
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
