Query= MSMg01no235_m04.b1 MSMg01no235_m04.b1 CHROMAT_FILE:
MSMg01no235_m04.b1 PHD_FILE: MSMg01no235_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:10 2005
(311 letters)
>mm_chr19_46040530_46041241
Length = 712
Score = 565 bits (292), Expect = e-165
Identities = 304/308 (98%), Gaps = 1/308 (0%)
Strand = Plus / Minus
Query: 5 gaattccttattgtgctctgcagtt-ttctaaaacattttaccccaagtagttagacttt 63
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 512 gaattccttattgtgctctgcagttgttctaaaacattttaccccaagtagttagacttt 453
Query: 64 gaagtgaagtcttttctttaatcttataaggcctggaccagggcaatgttacggttgatt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gaagtgaagtcttttctttaatcttataaggcctggaccagggcaatgttacggttgatt 393
Query: 124 cctgttattcacattatcctttgtaacatgatacagtacaagatggggtctatgtgttac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 cctgttattcacattatcctttgtaacatgatacagtacaagatggggtctatgtgttac 333
Query: 184 ttggtttgctttaatgtttaatgtttcttttcctcagaacttgatggagagtttggattc 243
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ttgatttgctttaatgtttaatgtttcttttcctcagaacttgatggagagtttggattc 273
Query: 244 attactttgtgcagaaggttctgaaagtctgaatagtttatgcctgaaacttcttctttg 303
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 272 attactttgtgcagaaggttctgaaagtctgaagagtttatgtctgaaacttcttctttg 213
Query: 304 cttggtga 311
||||||||
Sbjct: 212 cttggtga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 712
Length adjustment: 9
Effective length of query: 302
Effective length of database: 703
Effective search space: 212306
Effective search space used: 212306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_m04.g1 MSMg01no235_m04.g1 CHROMAT_FILE:
MSMg01no235_m04.g1 PHD_FILE: MSMg01no235_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:10 2005
(286 letters)
>mm_chr19_45885810_45886495
Length = 686
Score = 522 bits (270), Expect = e-153
Identities = 282/286 (98%)
Strand = Plus / Plus
Query: 1 caggttctgtgcgcccaggtagccctaaggaaacctaagtggaggtgtgcgcaaacctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggttctgtgcgcccaggtagccctaaggaaacctaagtggaggtgtgcgcaaacctca 260
Query: 61 acagcgtcatgtggaacccacatttcacagcataaatccacaaacttcatgccaacgtac 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagcgtcatgtggaacccacaattcacagcataaatccacaaacttcatgccaacgtac 320
Query: 121 aacttcatgaaagctagttatctgactcagggctctcaaaacaaactccaaagcactata 180
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 321 aacttcatgaaagctagttatctgactcagggctctcaaaccaaactccaaagcactaga 380
Query: 181 accctggcaatcctagggatgtgcaatccaggatgcaccacagcgttggagacacacaac 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 accctggcaatcctagggatgtgcaatccaggatgcaccacagtgttggagacacacaac 440
Query: 241 tccatctgtctgatcaggcatgaactcactagtgagctcagcttgt 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccatctgtctgatcaggcatgaactcactagtgagctcagcttgt 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
