BAC Information

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BAC

Clone NameMSMg01-236A09
Chromosome19 (Build37)
Map Location 56,556,432 - 56,556,779
singlet/doubletsinglet
Overlap gene9930023K05Rik
Upstream geneVti1a, LOC100043479, Tcf7l2, Ppnr, LOC100043484, Habp2, Nrap, Casp7
Downstream geneDclre1a, Nhlrc2, Adrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2, Ablim1, EG668259, AI450540, Trub1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236A09.T7 (MSMg01no236_a09.b1)MSMg01-236A09.TJ (MSMg01no236_a09.g1)
ACCAG401407AG401408
length728727
length of high quality
(start - end)
658 (71 - 728)347 (381 - 727)
definitionCHROMAT_FILE: MSMg01no236_a09.b1 PHD_FILE: MSMg01no236_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:29 2005CHROMAT_FILE: MSMg01no236_a09.g1 PHD_FILE: MSMg01no236_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCCTATGCCATGTATGGAACTCAAGCCCCCCAACAATTGTAGGAA
GAAGCAGTTGGCACAGAAGGCTCTGCCTTCATGGAAGAGATTGGCGTCTT
ATAAAAGGGCAGGCAGGACATCAAGGCCCTCTCGAGCCTTCTGTCCTTTG
CTATGTGTGAGGACTCTGTAGTCCTCCCTTCTGGAAGGCTTGGTAACTCT
ACTGCCATGGGAGCAAAGACTACCAGAAACAGACCAGGGCTGGTGCCATC
CTAGATCTAACCCAAAGGATGTCCTGAGGGAAGCAGAGGAGGCGGGGAGG
CTGTCTTAGTCAGGGTTCCTATTGCTGTGGTGAAACTCCATGATCAAAAG
ACAGTTGGGGAGGAAAGGGTTTATTCAGCTTCTCTATCAGTCCTTATCTC
TAAAGGGAGTCAGGGCAGGACCCCAAACAGGTCAGGGACTTGCGGCATGC
TGCTTACTGGCTTGCTCCTCATGGCTTGCTCAGCCTGCTTTCTTATAGAA
TCCAGGACCACCAGCCCAGGGATGGCATCTCCCACAAGAGACTGGGCCCT
CTCCCATCAATCACTAATTAAGAAAATGACCTGTATGGATCTTATGAAGG
AACATTCTCAATTAAGTTTCCCTCCTCTCAGACGACTTTAGCTTGTGTCA
AGTTAATATTAGCCAGCACAATTACAGC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCGCAGCCTCATAGTA
GGTTCAAGTCCAGCTTTAGCTACCTAGTGAGACTCTTTCCGCACATCCCC
AAATAAATAAGCCTGTTAAATTCATTTTAGTGGAGGATACGTGCACCACA
TGCGTGCCTGTTGCCATGGATCCTCTGGAACTGCAGTTGCAGACAGTTGT
GAGCTGCCATGTGGGTGCTGGGAATTGAACCCAGGTCCTCTGAAAGAGCA
GACAATGCTCTTAACCATGGAATCATGACTCCAGCCCTGGAAGATTGGAT
TTTTACATTATTATTCTTCCCCCCCCCGCAATATGCCACAATGTCATAAC
TTTCCATTTTCCCAAAGTTTTGCATTCTAAGACTTGTAAATAGCTACTTA
GCCTATGAGCTTGTCTACGGCCAAACTCCCAGATTTGTCCGTTCACTACG
TACTCATTAGAGAGTCGTTGTGCCACGTTGTGTGCCCGCTTCTGTCAGAC
ATTTATAGAGTATCCTGTTTTCCTTGGAACTGTGGAGTTAAAATTTTTTA
AACACCAACTAAGGAAGCAAAAAAGGGTAGATCTGTATTGCCAGGGCCAC
AAAGCCAGGCAAAAAGGATAGTCACATGAGTAAGTAAGTAGAAAATGTAC
GCCTTACTCACAACTACAATTAAAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_a09.g1 MSMg01no236_a09.g1 CHROMAT_FILE:
MSMg01no236_a09.g1 PHD_FILE: MSMg01no236_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:29 2005
         (347 letters)



>mm_chr19_56556232_56556979
          Length = 748

 Score =  650 bits (336), Expect = 0.0
 Identities = 345/348 (99%), Gaps = 1/348 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatgccacaatgtcataactttccattttcccaaagttttgcattctaagacttgtaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatgccacaatgtcataactttccattttcccaaagttttgcattctaagacttgtaaa 260

                                                                       
Query: 61  tagctacttagcctatgagcttgtctacggccaaactcccagatttgtccgttcactacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagctacttagcctatgagcttgtctacggccaaactcccagatttgtccgttcactacg 320

                                                                       
Query: 121 tactcattagagagtcgttgtgccacgttgtgtgcccgcttctgtcagacatttatagag 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 tactcattagagagtcgttgtgccacgttgtgtgcccacttctgtcagacatttatagag 380

                                                                       
Query: 181 tatcctgttttccttggaactgtggagttaaaattttttaaacaccaactaaggaagcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatcctgttttccttggaactgtggagttaaaattttttaaacaccaactaaggaagcaa 440

                                                                       
Query: 241 aaaa-gggtagatctgtattgccagggccacaaagccaggcaaaaaggatagtcacatga 299
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaagggtagatctgtattgccagggccacaaagccaggcaaaaaggatagtcacatga 500

                                                           
Query: 300 gtaagtaagtagaaaatgtacgccttactcacaactacaattaaagtg 347
           ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 gtaagtaagtagaaaatgtacgccttactcaaaactacaattaaagtg 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 748
Length adjustment: 9
Effective length of query: 338
Effective length of database: 739
Effective search space:   249782
Effective search space used:   249782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)