BAC Information

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BAC

Clone NameMSMg01-237G13
Chromosome19 (Build37)
Map Location 12,023,896 - 12,024,479
singlet/doubletsinglet
Overlap genenone
Upstream geneMs4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086
Downstream geneOsbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237G13.T7 (MSMg01no237_g13.b1)MSMg01-237G13.TJ (MSMg01no237_g13.g1)
ACCAG402366AG402367
length743731
length of high quality
(start - end)
585 (62 - 646)242 (57 - 298)
definitionCHROMAT_FILE: MSMg01no237_g13.b1 PHD_FILE: MSMg01no237_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:14 2005CHROMAT_FILE: MSMg01no237_g13.g1 PHD_FILE: MSMg01no237_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATTT
GTTTCTTCCCAGGGTCCAGATCTATATCACCACACCCATCCTTGCAATTC
TAATCTTTATCACCCACACAGTTCCTTTTTTGGTCATTCCCAAGAGGCAT
TAATTTGCCTACTGAAAAATGAAGACATTAAAACCCAATCAGGAAGGCTG
CAGACATCGCCTTCAAGCCGTCCTGCTTTCCAGCTGTTTCCACATGAAGT
TCAGATCTAAGATCAGGAACTATCTTCCAGCCAGGACACAAATTCTAGTT
TCAGTCCTTAACAGTGGATGGTGGAGAATCTAGATTCTAGATGATCATTT
TGGTGTAGTACAATTATAGTTGGCTCTTTTGTTTCAAAAGGCTAGAAGAT
CAAAATAGAAAGTTTGTTTGGGGCTGGAAATATGGCTTATGGCACACATA
CATGCAGGCAAAACAACCATACAATATATAAACAGATCTTTTTTTGTATT
CTTTCTGCATTATAAAATAGCTGCAAGAACGTAAAGTGATGTAGGCTTAT
TTAACTTTGCTTATTCTTCATGGAAGATGATGACAGACAAGAACTATTTG
AAGATTGACTTGCAACAGTTAAATTTTTGTACAGTGGGACACAGAACCAT
ACACAAGGTGGCTCTCTCTGCACTGGTAAAGATGGTCACAGTATATTAAA
AGTAAATGCAAAATGTGTCTAATTTGTATCTTAACGTGCCTGT
TGGCGGCCGCCTGTTTCCCACGAGGAGGNGACACTATAGAATTTTCCGAA
AAATTCAATTCCTAAAACCCAGATACAAACACAAGGNATAGAGGTATCTC
TATACCCCTAGCACTGGAAAGGCAGGGACAGGTGGATCCCTGACCAGCCA
GTGCAGCCTAACTGGTGAGTTCTGTGCCATGGGCCTTGGTGTGGCACAGC
CTTGAGAACTATGTGTCCTGAGGACTTTATGCTGTTTTGGAATTCTGCTC
TGCTTGCATTCCTCTTACTCTAAGAGTTATATGAAAACTTTAAGGGGGCT
TCCGTTCTTCACTGGGCAGTATCTCTGGCATTCGCAATATTAATTTCTTC
TCCCCCCCCCCCTTGCTGCTGGAGCAGGTTATGATTCTATCACCACCCTA
GAAAAAAATAAAGAGATGGAGATTGTCGACAGTGACCACCACCCTTAGAA
AACACTTGGAAAAATAAAGTTGTTAGTGAAGCTAGGTTGAGATGTTTTTA
CTACTGGCTCTGATATAAAATATCTTACGGAACAATATGAAGTTCAGAAA
GACACACACACTCTTACGAGTTAAGCTTGTTCCCTTTTATGATCAGGGAA
CAAGAACAATGGCAGCACTGGCTGGCGTGACTCTCACTGATTTTTTTCTG
GTGAAAATTGATTTCTTTTTTTTTTTATTACATATTTTCCCCAATTACAT
TTCCAATGCTATCCCAAAAGTCCCCCTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_g13.b1 MSMg01no237_g13.b1 CHROMAT_FILE:
MSMg01no237_g13.b1 PHD_FILE: MSMg01no237_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:14 2005
         (585 letters)



>mm_chr19_12023696_12024679
          Length = 984

 Score = 1077 bits (557), Expect = 0.0
 Identities = 578/585 (98%), Gaps = 1/585 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggtccagatctatatcaccacacccatccttgcaattctaatctttatcacccacacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 784 gggtccagatctatatcaccacacccatccttgcaattctaatctttatcacaaacacag 725

                                                                       
Query: 61  ttccttttttggtcattcccaagaggcattaatttgcctactgaaaaatgaagacattaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ttccttttttggtcattcccaagaggcattaatttgcctactgaaaaatgaagacattaa 665

                                                                       
Query: 121 aacccaatcaggaaggctgcagacatcgccttcaagccgtcctgctttccagctgtttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 aacccaatcaggaaggctgcagacatcgccttcaagccgtcctgctttccagctgtttcc 605

                                                                       
Query: 181 acatgaagttcagatctaagatcaggaactatcttccagccaggacacaaattctagttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 acatgaagttcagatctaagatcaggaactatcttccagccaggacacaaattctagttt 545

                                                                       
Query: 241 cagtccttaacagtggatggtggagaatctagattctagatgatcattttggtgtagtac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 cagtccttaacagtggatggtggagaatctagattctagatgatcattttggtgtagtac 485

                                                                       
Query: 301 aattatagttggctcttttgtttcaaaaggctagaagatcaaaatagaaagtttgtttgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 484 aattatagttggctcttttgtttcaaaaggctagaagatcaaaatagaacgtttgtttgg 425

                                                                       
Query: 361 ggctggaaatatggcttatggcacacatacatgcaggcaaaacaaccatacaatatataa 420
           | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 424 gtctggaaatatggcttatggcacacatacatgcaggcaagacaaccatacaatatataa 365

                                                                       
Query: 421 acagatctttttttgtattctttctgcattataaaatagctgcaagaacgtaaagtgatg 480
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 acagatc-ttttttgtattctttctgcattataaaatagctgcaagaacgtaaagtgatg 306

                                                                       
Query: 481 taggcttatttaactttgcttattcttcatggaagatgatgacagacaagaactatttga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 taggcttatttaactttgcttattcttcatggaagatgatgacagacaagaactatttga 246

                                                        
Query: 541 agattgacttgcaacagttaaatttttgtacagtgggacacagaa 585
           |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 245 agattgacttgcaacagttaaatttttgcacagtgggacacagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 984
Length adjustment: 10
Effective length of query: 575
Effective length of database: 974
Effective search space:   560050
Effective search space used:   560050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)