BAC Information

Click to search

BAC

Clone NameMSMg01-260E19
Chromosome19 (Build37)
Map Location 61,153,658 - 61,153,933
singlet/doubletsinglet
Overlap geneGprk5
Upstream geneLOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik, Prlhr, 2700078E11Rik, Nanos1, Eif3s10, 1810055E12Rik, Sfxn4, Prdx3, LOC671322
Downstream geneBC029127, LOC100043112, EG547091, LOC433261, EG633057, Csf2ra, LOC100043120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260E19.T7 (MSMg01no260_e19.b1)MSMg01-260E19.TJ (MSMg01no260_e19.g1)
ACCAG403002AG403003
length770752
length of high quality
(start - end)
279 (46 - 324)591 (78 - 668)
definitionCHROMAT_FILE: MSMg01no260_e19.b1 PHD_FILE: MSMg01no260_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:21 2005CHROMAT_FILE: MSMg01no260_e19.g1 PHD_FILE: MSMg01no260_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGGTTGTCCACCCCAACTCCAACACACTTTCTTTTAAGTAAAG
ACAATGAAAGAGGTCGTCCATTGTGCTGAACCCTTAGGGGAATTTTTTTT
TTTTTAATTTCAATTACAAAAATAAAAAACAAATCCCAGGAACACTGGGA
CTAGAGTTTGGAGTAAGAGCCATGGAGAACACTCATTTGTAAAACCTTTT
AGGGTACTAAGATAATCTTTACCCAGAAATCAACTGACTGTGCAGGTGCC
TGAGGGTCTGTGAGGACTGACAGGGTCCCATATACTGACAGTGCCCTGTG
TAGAGTTTCTAATAACATCAGTCAGGCACTTATCACAGGTTTTTTTTTTT
TAAACAGATTATGTGGGAACCCAATTTGCTACAACAATTATATTCCAGTG
TGCCCTTTGAAAAATGTAATGTAACTAACCTACATCTAAACATCTGCCTT
CTTCTGAACACATAAAGGAATAATAAAATATTCTTTCAAAATGTATTAGG
GGAAGCGGTACAGATGGCTCGGTGCTTAAGACTACTTAACCCTCCTCCAG
AGCACAAGAGCTTGGTTCCCAGCCCCAAACCTTAGGGAGTCTACTATTCA
CCTGTAACTCCAGCCTCCAGGGGTTTCCCTTGCCCCATTCTAAATTATTC
TCTTCTTTTTTTACGCATAATTCCATCAATTTTCCACTATTATGTTTTCT
CTATAATATAAATACAATGC
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGACTAGGGGGTTGCATCGAC
CCCCCGGTGTGGCACCCTGGACGCCACTGGAGACCGAGGAATCATAACAG
GGGCCCTGATCCTTAGGAGTGTTTCCTCGCTTAAGGGAAATTAGGTCCCA
TGATGATGATGGCTTCCAGTATGCCTGTCCAGTGGTCTCACATCCCCATT
TGCCACAGTAGCCCTCTCCCGGCCCTCCACACCCTATTGGTACAGTATGA
CCGGGGCAAACATAGAAGTCATACAGTCTTGTCCTTTTTCTTCCCCCGGG
AGAGCGGCAACCATCTCCATCTGGGTCATCCCAGTAGTCTCCTACTAAAT
CACACAGATCAAAATATAGCTCAGGGAAGGTGTCTGTCATCGTCCCCAGG
AGGGAGGTGGCGTTAGCTGTTTGTCCTGTCATTAGGTTGGTAACTCTCCA
AGTAACATTGAAGACCTGGTGAGGGCTGTCACGTTGTACCGAGGCTCCTG
CCCTCACTAAGATCCCCATAACTATCAGGGGGCCCCACGGGTTAATCTTA
TCTTTAAGGGATTTTGAGAACGCTGGACCTTCCATGCTGTTCCGGCCGGA
GGAGTTGTCGCCGCCTTTACGTGAGCGGTGTGTATCCACGCAGAGATGCC
GTCTACTTTGAGAGTGTTGTGGGTGGTCAGCAAGACGGTGTACGTTCTTT
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_e19.b1 MSMg01no260_e19.b1 CHROMAT_FILE:
MSMg01no260_e19.b1 PHD_FILE: MSMg01no260_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:21 2005
         (279 letters)



>mm_chr19_61153324_61154002
          Length = 679

 Score =  518 bits (268), Expect = e-151
 Identities = 274/276 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccagggttgtccaccccaactccaacacactttcttttaagtaaagacaatgaa 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ggaattccagggttgcccaccccaactccaacacactttcttttaagtaaagacaatgaa 551

                                                                       
Query: 64  agaggtcgtccattgtgctgaacccttaggggaatttttttttttttaatttcaattaca 123
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 agaggtcgtccattgtgttgaacccttaggggaatttttttttttttaatttcaattaca 491

                                                                       
Query: 124 aaaataaaaaacaaatcccaggaacactgggactagagtttggagtaagagccatggaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aaaataaaaaacaaatcccaggaacactgggactagagtttggagtaagagccatggaga 431

                                                                       
Query: 184 acactcatttgtaaaaccttttagggtactaagataatctttacccagaaatcaactgac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 acactcatttgtaaaaccttttagggtactaagataatctttacccagaaatcaactgac 371

                                               
Query: 244 tgtgcaggtgcctgagggtctgtgaggactgacagg 279
           ||||||||||||||||||||||||||||||||||||
Sbjct: 370 tgtgcaggtgcctgagggtctgtgaggactgacagg 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)