Query= MSMg01no261_a06.b1 MSMg01no261_a06.b1 CHROMAT_FILE:
MSMg01no261_a06.b1 PHD_FILE: MSMg01no261_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:18 2005
(465 letters)
>mm_chr19_59199874_59200739
Length = 866
Score = 872 bits (451), Expect = 0.0
Identities = 460/465 (98%), Gaps = 5/465 (1%)
Strand = Plus / Minus
Query: 4 ggaattcttgcagagt---cccagcctgcacactacaggtgctactatctgcacacctgt 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ggaattcttgcagagtaaa--cagcctgcacactacaggtgctactatctgcacacctgt 609
Query: 61 attggaggacttgctgagcgaagacattctgacttcttaatggatggccatgaaattgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 attggaggacttgctgagcgaagacattctgacttcttaatggatggccatgaaattgac 549
Query: 121 aaattaagggggaaggaaattgcctctgtgaaagtgcacagctcatcttcccgggaatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aaattaagggggaaggaaattgcctctgtgaaagtgcacagctcatcttcccgggaatga 489
Query: 181 ctcagggccttcttccctctaggctataattttagtttcttttctaatggaagcattcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ctcagggccttcttccctctaggctataattttagtttcttttctaatggaagcattcat 429
Query: 241 attttgtgctcttctctcaccttacagcctactgaaaatttctttaaagggaaatgaagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 attttgtgctcttctctcaccttacagcctactgaaaatttctttaaagggaaatgaagt 369
Query: 301 tagaagccacagttcaaaaagcagcatttacctgaaccacctctactaacattaagattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tagaagccacagttcaaaaagcagcatttacctgaaccacctctactaacattaagattt 309
Query: 361 aggcaactccttttaatcaagcattcctgaattttaatgagctatgaatcaatgttacca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aggcaactccttttaatcaagcattcctgaattttaatgagctatgaatcaatgttacca 249
Query: 421 tcttactaggatcaaggcaatgttttattcttttaaaataccttt 465
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tcttactaggatcaaggcaatgttttattcttttaaaataccttt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 866
Length adjustment: 10
Effective length of query: 455
Effective length of database: 856
Effective search space: 389480
Effective search space used: 389480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_a06.g1 MSMg01no261_a06.g1 CHROMAT_FILE:
MSMg01no261_a06.g1 PHD_FILE: MSMg01no261_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:18 2005
(553 letters)
>mm_chr19_59047693_59048643
Length = 951
Score = 1023 bits (529), Expect = 0.0
Identities = 547/553 (98%), Gaps = 2/553 (0%)
Strand = Plus / Plus
Query: 1 aaatcgcagcataacagaacccatctaagagaattaatctgccagcagttagcatattgt 60
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 aaattgcagcataacagaacccatctaaaagaattaatctgccagcagttagcatattgt 260
Query: 61 ttagcagtcttattcagtcagagaaacacacggttgaaaaaaaaaagtcacgttttaatt 120
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 261 ttagcagtcttattcagtcagagaaacacacggttgaaaaaaaaaa-tcgcgttttaatt 319
Query: 121 cctcatgagtaaactgacagggatataaaatcagcactgacagacagggaaaacagtcaa 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccccatgagtaaactgacagggatataaaatcagcactgacagacagggaaaacagtcaa 379
Query: 181 gcccattgaccctacagaaagagaattgtccccaagccgaggaagtgtcctcacctgcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcccattgaccctacagaaagagaattgtccccaagccgaggaagtgtcctcacctgcct 439
Query: 241 tcccacctccccaggcccacgctagtagcacacgtgcaaaaatacaataggatacaacta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcccacctccccaggcccacgctagtagcacacgtgcaaaaatacaataggatacaacta 499
Query: 301 ctgcaattgttatcattttcttttgccctcaggtgcagagcacctgacagctacatgccg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctgcaattgttatcattttcttttgccctcaggtgcagagcacctgacagctacatgccg 559
Query: 361 agtcatgctaacaaaactaagcctttccatttccttaatagtaaaattaccattactgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agtcatgctaacaaaactaagcctttccatttccttaatagtaaaattaccattactgaa 619
Query: 421 tcattatcataaaaagtgcactcaagtacattaccacttattttaaataaacaccaattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcattatcataaaaagtgcactcaagtacattaccacttattttaaataaacaccaattt 679
Query: 481 tgaaacaatcaactttgaaaacctgcataagttttttttttttaaatccctgattacatt 540
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 680 tgaaacaatcaactttgaaaacctgcataagttttttttttt-aaatccctgattacatt 738
Query: 541 tctatttattcac 553
|||||||||||||
Sbjct: 739 tctatttattcac 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 951
Length adjustment: 10
Effective length of query: 543
Effective length of database: 941
Effective search space: 510963
Effective search space used: 510963
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
