BAC Information

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BAC

Clone NameMSMg01-267J22
Chromosome19 (Build37)
Map Location 45,475,117 - 45,475,427
singlet/doubletsinglet
Overlap geneBtrc
Upstream geneScd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1
Downstream geneEG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267J22.T7 (MSMg01no267_j22.b1)MSMg01-267J22.TJ (MSMg01no267_j22.g1)
ACCAG408286AG408287
length735741
length of high quality
(start - end)		317 (46 - 362)296 (73 - 368)
definitionCHROMAT_FILE: MSMg01no267_j22.b1 PHD_FILE: MSMg01no267_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:44 2005CHROMAT_FILE: MSMg01no267_j22.g1 PHD_FILE: MSMg01no267_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATCTTACAATTCAGTTTATCATAATCCAGGATGCAAACTAGTAC
ATTTCAAATACATATCCTGTTCATCATCAATTTTCAGAAAGCCAATTTAA
AAACCTGCATCAGATGTTAATATAAAGTATTTTCACAGTTTTACAAACTA
CATTTAAAAGATTCTCTTCCAACACACACCAAAGAGCTCTCTAATTAGAC
TTAAGGCCTGCCTAAAAGAAAGACACCATGCCTAGTACTAGGAACCCATC
AACTCCCCAGCACTGAGTCTTGGATCTTAGAGGAGAGTCAACAACTGCCA
CTTTACGAAATCTGCATAANCCCCGANTACATNTCACTACCTGTTTATAC
CCACAGACGTCTAGGCCTCACCCCTCACAAAAGACACTTCTCTTTGCAGT
GGATGAAGACCATTAACAGAAAACTATAACTCATCAAATGCAGAGCTGGA
CTCCTGCACCTTAGGGTCAAGGGAGTTTGCTGTGAGATTTTGACTCCTAG
TAACTAAGAAGCTGCAACCATGAAGTCTCACCAGCATGGCTACATATACA
TGACCTGAACAAGGAAGAGACCAATAGACATGCTAACGTGGACAGGGAAA
GCTCACAAGGCTTCCGTCCTACACAAAGAACTACAGGGAACTAAGGAATG
CAAGAGAAGCAGTCCTCCTCAGGGAAGAGCTTACC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGGGGACTCTGGAGAGGGTATAAATGCG
AGTGCCCAGAGAGGAGCCTTCGAGCCTGCTGCACCCCTTGCTGCTGCTCG
TTCCTGTAGCTGTGGATCATCAACTAATCATGAGCAAAGACAGAAGAAGA
AATCGGATGACCTGACAAAGATTGGACTTGCCCCCCAAGGAACTCCATGT
CCCTAATCATCAAGAAGTAGTCTAGCTGGGCGTGGTGGAGCACGCCTTTA
ATCCCAGCACTCGGGAAGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCA
GCCTGGTCTACAAAGTGTGTTCCAGGACAGCCAGCACTATACAGAGAAAC
CCTGTCTCGAAAAAACAAACAAACAAACAAACAAAAGAAGTAGTCTAAAG
AGATCCATGCCCTCTTTTCCCTCTAACCTCTCTTGCCTACCTAGTGTTGG
GGACTTGGGGGGTGGTAGATATAAGAACCCAATAAAGTAACCAAAAGGTA
CGATTACACCCTTCCCTCCCACGTAAAAAACAAACAAACAAACAAACAAC
AAACCCCTAACGTTGTCGAGGAGAAAGGATGGAAGGAGAGACGGGTGGGG
GAGAGGATATAGTTGATGCTGATGGCAAAAGTTCCTCAGAGCATCTTTTC
AGAATGAGGAAGGAAGGAGCCAGTTAGGTGTACCTGCAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_j22.b1 MSMg01no267_j22.b1 CHROMAT_FILE:
MSMg01no267_j22.b1 PHD_FILE: MSMg01no267_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:44 2005
         (317 letters)



>mm_chr19_45475042_45475758
          Length = 717

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatcttacaattcagtttatcataatccaggatgcaaactagtacatttcaaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gaattccatcttacaattcagtttatcataatccaggatgcaaactagtacatttcaaat 327

                                                                       
Query: 65  acatatcctgttcatcatcaattttcagaaagccaatttaaaaacctgcatcagatgtta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 acatatcctgttcatcatcaattttcagaaagccaatttaaaaacctgcatcagatgtta 267

                                                                       
Query: 125 atataaagtattttcacagttttacaaactacatttaaaagattctcttccaacacacac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atataaagtattttcacagttttacaaactacatttaaaagattctcttccaacacacac 207

                                                                       
Query: 185 caaagagctctctaattagacttaaggcctgcctaaaagaaagacaccatgcctagtact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 caaagagctctctaattagacttaaggcctgcctaaaagaaagacaccatgcctagtact 147

                                                                       
Query: 245 aggaacccatcaactccccagcactgagtcttggatcttagaggagagtcaacaactgcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 146 aggaacccatcaactccccagcactgagtcttggatcttagaggagagtcaacaattgcc 87

                      
Query: 305 actttacgaaa 315
           |||||||||||
Sbjct: 86  actttacgaaa 76


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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