Query= MSMg01no269_a20.b1 MSMg01no269_a20.b1 CHROMAT_FILE:
MSMg01no269_a20.b1 PHD_FILE: MSMg01no269_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:26 2005
(319 letters)
>mm_chr19_58410152_58410870
Length = 719
Score = 603 bits (312), Expect = e-177
Identities = 312/312 (100%)
Strand = Plus / Plus
Query: 5 gaattcactcagaatcggagggtaagtggagacctgaatgctgaaaacagctagaaccac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactcagaatcggagggtaagtggagacctgaatgctgaaaacagctagaaccac 264
Query: 65 cctttgttattaaactcagccgttcaatcaccccccctccccgatccccacccctgcccc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctttgttattaaactcagccgttcaatcaccccccctccccgatccccacccctgcccc 324
Query: 125 caccccttctccccctccccacctccaaccctgctcccatccctgctctccacccccaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caccccttctccccctccccacctccaaccctgctcccatccctgctctccacccccaac 384
Query: 185 cctgtgtggcaaggcactcagctttgatccaccatgccaaccacccccatatattgttta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctgtgtggcaaggcactcagctttgatccaccatgccaaccacccccatatattgttta 444
Query: 245 tttattttctgcactggtccaaacaaatacctcaattccaggttgtttatgaaacagttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttattttctgcactggtccaaacaaatacctcaattccaggttgtttatgaaacagttt 504
Query: 305 ggtgatctgatt 316
||||||||||||
Sbjct: 505 ggtgatctgatt 516
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no269_a20.g1 MSMg01no269_a20.g1 CHROMAT_FILE:
MSMg01no269_a20.g1 PHD_FILE: MSMg01no269_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:26 2005
(658 letters)
>mm_chr19_58543617_58544674
Length = 1058
Score = 758 bits (392), Expect = 0.0
Identities = 524/612 (85%), Gaps = 80/612 (13%)
Strand = Plus / Minus
Query: 47 tctgcctccctgtactgagactaaaggcatttgctaccatatctggtttcatctgaaatt 106
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1058 tctggctccctgtactgagactaaaggcatttgctaccatatctggtttcatctgaaatt 999
Query: 107 ttctaattgtgtaagctgcctatttaaaggcttataaagttcagtgcacacaaaaacgta 166
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 998 ttctaattgtgtaagctgcctatttaaaggtttataaagctcagtgcacacaaaaacgta 939
Query: 167 acaaaatcacttctttcttcttcttcttcttcttcttcttcttcttcttcttcttcttct 226
|||||||||||||||| || || ||||| ||||| ||| |||
Sbjct: 938 acaaaatcacttcttt-------------------tt-tt-ttctt-ttctt-ttc-tct 903
Query: 227 tcttcttcttcctcttcctcttcctcttcctcttcctcttcctcttcctcttcctcttct 286
|||| ||||| ||||
Sbjct: 902 tctt-ttctt----------------------------------------------ttct 890
Query: 287 tcttcttcttcttcttcttcttcttcttcttcttcttttttgtagtttttaatgggctgc 346
|||| |||| ||||| || ||||| ||||| ||||||||||||||||||||||||
Sbjct: 889 --ttct--ttct--ttctt-tttttctt-ttctt-ttttttgtagtttttaatgggctgt 839
Query: 347 atgttcgcatctgctaatctgtcctaaggctcaggctgtgccgggcagaaccagtatctt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 atgttcgcatctgctaatctgtcctaaggctcaggctgtgccgggcagaaccagtatctt 779
Query: 407 ctgtctcagtcagtatcactgtacctgtggatccgggagaccgtctaattcagatccatc 466
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 778 ctgtctcagtcagtatcactgtacctgtgcatccgggagaccgtctaattcagatccatc 719
Query: 467 aaaatgggaagaaagggtgatgtctcccgtcttataattagcctgctgtgagtggagttc 526
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 718 aaaatggaaagaaagggtgatgtctcccgtcttataattagcccgctgtgagtggagttc 659
Query: 527 aagggtctccagggccaggatggaggtttgaatgcactgagtgctgctgacaggaccaca 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 aagggtctccagggccaggatggaggtttgaatgcactgagtgctgctgacaggaccaca 599
Query: 587 gccccacaggctgggacagtagtgtcagagggctgtggtggatgctcattttgaatcggt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gccccacaggctgggacagtagtgtcagagggctgtggtggatgctcattttgaatcggt 539
Query: 647 tttcctgcaggt 658
||||||||||||
Sbjct: 538 tttcctgcaggt 527
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
