BAC Information

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BAC

Clone NameMSMg01-269B04
Chromosome19 (Build37)
Map Location 45,304,792 - 45,305,087
singlet/doubletsinglet
Overlap genenone
Upstream geneScd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1
Downstream geneLbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269B04.T7 (MSMg01no269_b04.b1)MSMg01-269B04.TJ (MSMg01no269_b04.g1)
ACCAG409304AG409305
length790731
length of high quality
(start - end)
168 (45 - 212)296 (73 - 368)
definitionCHROMAT_FILE: MSMg01no269_b04.b1 PHD_FILE: MSMg01no269_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:27 2005CHROMAT_FILE: MSMg01no269_b04.g1 PHD_FILE: MSMg01no269_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGCACCCTGGTCCACAATTCCAGTTCCAGGACAGTTATACAGAG
AAACCCTGTCTCAACAACAACAACAACAAAACAGAAAAGAAAGAGAGAAA
GAAAGAAAGAAATTAAAGAGAGAAAGGGAGGGAGGGAGGGAGGGAAGGAA
GGAAGGAAGGCCCCCNCCTCCCCCCTCCCCCCCCCCCCCTCCCNTTGGNT
NCCCTCCCTTTTTTTTCTTTCTCTTCCCTTCCCTCTTTCTTTCTNNTCTT
CCCCTCCTCCCCCTCTCCCTCCTCTTTTTTTCTCCNCCCCTCTCCCCTTT
CTTTTCCNCCNTTNTTTTTTTTTTTCTCCCCCCCCCCCCCCCCCNTNNNT
NTTTNGTGTGTTTTTTTTTGTCCCCCCCCCCCCCAAAAAAAAATATAAAA
TTTCTGTGGGGGTGCTGTGTCTTATCTCTTTTTATTTTTCCTTCCTTCTC
TTCACGAATCTCTCCTCCTTCGTTTCTCTTCCATTTTGTGATAAATCCCT
CCTGCTTATTTTCTGTCTCGTTTCTTTTTTTCCCCCTTTTTTTCCTTATT
TTTATCCCCTTCCATATTACCGCTCTCCTCTCTTTCTTGTTTTACTTTAC
ACATTCTTCCTACAACTCCGCAAATCATCCTTTCATTCCCCTTTCTACCT
CCTCCCTCTCTCTTTGTTAATAGTTCAATCGTCCATTTTATGTCTTTTAA
TATTCTCACTCACTTGTTATATATTTACGTGTCTCCTCTT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGCGGAGCCGAGGTGACCGCAGAGTGGC
TTCCTTACGTTGATCAGAGTTCCCGCACGTCTAGGGCTCACCGGCTGGGG
CTCAGCCTCAGGTGTCCCTCCCCTCCACATGGTCACTCTTTCCTTCAACT
GGACTTCCCTGCCAGCCCACAGACACAACGGATCACTTCTGTCTCTCAAG
GCCTGAGTCTTAGGCCTCCTCCTCCAAGAAGCCATTTCCACCCATGAGCC
CGAAGTTGGGTCTTGGCCTTTTGCAAGCAGCCCTCCCTCATGGTCACCGA
GGATTTCCTAACGTTCATCGGTGCTTCCGGGCCTGCAGATTAGATTAGGA
GCTTCTTGAGGGCACCCACCAGCTCTGCTTGCGTTTCAATTTCCCTAGAC
ACCTGCACACAATAAATATTTGCTGAATCGATTCCCCCCTTTTACTTTAT
TAATCCTTCTCCTTCCGTCTTCCCCTCTTTCTTTTCCTCCTTCCTTCCTC
CCTCGTTATTTTTTATTTCTTGGTTATATTCAATTGTCATGTTTTTCAGG
CTCATTAAATCCATTTAGAGACAAAAGAATAAAAGGCAGAAGAGAAAAGG
GAGGGGTAAATAGGGAGGGGTAGCCTCTTCTCCCGCTCCAAAAGACCTAT
ATAACAGGAACTATCTCACATACATTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_b04.g1 MSMg01no269_b04.g1 CHROMAT_FILE:
MSMg01no269_b04.g1 PHD_FILE: MSMg01no269_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:27 2005
         (296 letters)



>mm_chr19_45304592_45305287
          Length = 696

 Score =  565 bits (292), Expect = e-165
 Identities = 295/296 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcggagccgaggtgaccgcagagtggcttccttacgttgatcagagttcccgcacgtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcggagccgaggtgaccgcagagtggcttccttacgttgatcagagttcccgcacgtct 260

                                                                       
Query: 61  agggctcaccggctggggctcagcctcaggtgtccctcccctccacatggtcactctttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggctcaccggctggggctcagcctcaggtgtccctcccctccacatggtcactctttc 320

                                                                       
Query: 121 cttcaactggacttccctgccagcccacagacacaacggatcacttctgtctctcaaggc 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 cttcaactggacttccctgccagcccacagacacaacggatcacttttgtctctcaaggc 380

                                                                       
Query: 181 ctgagtcttaggcctcctcctccaagaagccatttccacccatgagcccgaagttgggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgagtcttaggcctcctcctccaagaagccatttccacccatgagcccgaagttgggtc 440

                                                                   
Query: 241 ttggccttttgcaagcagccctccctcatggtcaccgaggatttcctaacgttcat 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggccttttgcaagcagccctccctcatggtcaccgaggatttcctaacgttcat 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)