Query= MSMg01no270_e19.b1 MSMg01no270_e19.b1 CHROMAT_FILE:
MSMg01no270_e19.b1 PHD_FILE: MSMg01no270_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:55 2005
(695 letters)
>mm_chr19_58035660_58036756
Length = 1097
Score = 1288 bits (666), Expect = 0.0
Identities = 687/694 (98%), Gaps = 2/694 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaagagtgaatcaggcaagttggagcttgtatttttaatgacagaaggcttgtc 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaagagtgaatcgggcaagttggagcttgtatttttaatgacagaaggcttgtc 263
Query: 64 aatagctgcacttagtttgctgcagtttcccccatggaaagctcagtttgttagctttag 123
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatagccgcacttagtttgctgcagtttcccccatggaaagctcagtttgttagctttag 323
Query: 124 gataggctcagtcaatggattcc-tttttttctgagagaaatgatccacaggaggtcccc 182
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 324 gataggctcagtcaatggattccttttttttctgagagaaatgatccacaggaggtcccc 383
Query: 183 tgaggaggaaagtcctgagaaaacccaggcagcctttcatgctgaacaacacaaccaggg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgaggaggaaagtcctgagaaaacccaggcagcctttcatgctgaacaacacaaccaggg 443
Query: 243 aagtaagaccctgacctatttgagggagactttcaaagccctagctgttggagctctttt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagtaagaccctgacctatttgagggagactttcaaagccctagctgttggagctctttt 503
Query: 303 tcttt-aaaaaaaaaaatctattcacattatcaaaagaaagctgaaaatgatagcaaaag 361
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tctttaaaaaaaaaaaatcaattcacattatcaaaagaaagctgaaaatgatagcaaaag 563
Query: 362 gcctgtttcattttaaaaaaacttttcttctgttataataatacattatttgaagtgctt 421
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcctgtttcatttaaaaaaaacttttcttctgttataataatacattatttgaagtgctt 623
Query: 422 gaaattggtctcaaatactattaaagcacatattaaagatgacagtaattacactctgtg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaaattggtctcaaatactattaaagcacatattaaagatgacagtaattacactctgtg 683
Query: 482 agtttgcctgttggtcggcaacccttgaggtgtcttgcagtgaacaatctgcggggcgaa 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agtttgcctgttggtcggcaacccttgaggtgtcttgcagtgaacaatctgcggggcgaa 743
Query: 542 gggggtggtgcacgtggactgaggtaagagaagtgaggttggaacacatccaccagggcc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gggggtggtgcacgtggactgaggtaagagaagtgaggttggaacacatccaccagggcc 803
Query: 602 cgtggcctgactgtgcgcctggggacttatatgcatctgttgctgagctcccaactccat 661
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 804 cgtggcctgactgtgcgcctggggacttatgtgcatctgttgctgagctcccaactccat 863
Query: 662 atggccttttgtgtggcgggcaggtatggctggc 695
||||||||||||||||||||||||||||||||||
Sbjct: 864 atggccttttgtgtggcgggcaggtatggctggc 897
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1097
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1087
Effective search space: 744595
Effective search space used: 744595
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_e19.g1 MSMg01no270_e19.g1 CHROMAT_FILE:
MSMg01no270_e19.g1 PHD_FILE: MSMg01no270_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:55 2005
(650 letters)
>mm_chr19_58180717_58181766
Length = 1050
Score = 1114 bits (576), Expect = 0.0
Identities = 633/652 (97%), Gaps = 3/652 (0%)
Strand = Plus / Minus
Query: 1 tcagtggtggagtgggatgccttgttttattatttatttattt-ttttagagttacaaaa 59
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 899 tcagtggtggagcgggatgccttgttttattatttatttatttattttagagttacgaaa 840
Query: 60 ttgaaagctctagagagattatgtgccaaagaatgacccagaaccaggaagtagaagagc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 ttgaaagctctagagagattatgtgccaaagaatgacccagaaccaggaagtagaagagc 780
Query: 120 tgagctctgaaccttctgactcccttccccctcaa-gagttggctcttcagagacaggaa 178
||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||
Sbjct: 779 tgagctctgaaccttctgactcccttccccctcaatgagtttg-tcttcagagacaggaa 721
Query: 179 aactaaatatgagaaattcagttggcaggaatgagagatgagaatggtagctcgccctgg 238
|||||| ||||||||||||||| || ||||||||||||||||||||||||||| ||||||
Sbjct: 720 aactaagtatgagaaattcagtcggtaggaatgagagatgagaatggtagctcaccctgg 661
Query: 239 tctacaactgcgctgaaagtgagcatcgaggagctggaagcttggggttgtctcttcaga 298
|||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct: 660 tctacaactgcgctgaaagtgagcatcgaggagccagaagcttggggctgcctcttcaga 601
Query: 299 agtccacaggcagctggaaggctgaaggtgactctgtggattgtgacagcaggagccctc 358
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 agtccacaggcagctggagggctgaaggtgactctgtggattgtgacagcaggagccctc 541
Query: 359 aagctgggacctcacgtggcacacacatctccatttgctttgacaactgctgcctattcc 418
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aagctgggacctcacgtgtcacacacatctccatttgctttgacaactgctgcctattcc 481
Query: 419 agacacaccagtccctgctctttggtgggcatgatctcagagcccaacatccccacaccc 478
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 agacacaccagtccctgctttttggtgggcatgatctcagagcccaacatccccacaccc 421
Query: 479 ttggggtccatgccccatgtttccctctccctggtccacccaccttgtgctatcttactt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ttggggtccatgccccatgtttccctctccctggtccacccaccttgtgctatcttactt 361
Query: 539 ccctcaaaagagcaccccgacctcgttctggtgtgtctcagaagccaggctcattctcag 598
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ccctcaaaagagcatcccgacctcgttctggtgtgtctcagaagccaggctcattctcaa 301
Query: 599 agtactttgaactttatacctgaaacttgaaccaaggtaagaatcatggtgg 650
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agtactttgaactttatacctgaaacttgaaccaaggtaagaatcatggtgg 249
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
