Query= MSMg01no271_d16.b1 MSMg01no271_d16.b1 CHROMAT_FILE:
MSMg01no271_d16.b1 PHD_FILE: MSMg01no271_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:03 2005
(311 letters)
>mm_chr19_33123979_33124689
Length = 711
Score = 501 bits (259), Expect = e-146
Identities = 290/307 (94%), Gaps = 12/307 (3%)
Strand = Plus / Minus
Query: 5 gaattctgtctcccttgccctctctttccctttctcacacataaacacacacacacacac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gaattctgtctcccttgccctctctttccctttctcacacataaacacacacacacacac 514
Query: 65 acacacacacaccctacaatccctgctgctatggctccttttccttagagcacagccacc 124
|| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 513 ---------ca---tacaatccctgctgctatggctcctttcccttagagcacagccacc 466
Query: 125 caaaggtagtcaaccatttcacatggaggtcagtgtccagctagatcaagacagaaggag 184
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cgaaggtagtcaaccatttcacatggaggtcagtgtccagctagatcaagacagaaggag 406
Query: 185 gctgctcacgctcgtggacacagagcaggcattcatccctttcaccgtgaactcttttgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gctgctcacgctcgtggacacagagcaggcattcatccctttcaccgtgaactcttttgg 346
Query: 245 tcagactatcacagaccaacccagactcttagaactaggaacccactgctttggagtaag 304
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 345 tcagactatcacagaccaacccagactcaaagaactaggaacccactgctttggagtaag 286
Query: 305 gatgtca 311
| |||||
Sbjct: 285 ggtgtca 279
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space: 212004
Effective search space used: 212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no271_d16.g1 MSMg01no271_d16.g1 CHROMAT_FILE:
MSMg01no271_d16.g1 PHD_FILE: MSMg01no271_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:04 2005
(288 letters)
>mm_chr19_32959164_32959851
Length = 688
Score = 497 bits (257), Expect = e-145
Identities = 277/287 (96%), Gaps = 8/287 (2%)
Strand = Plus / Plus
Query: 1 tgagtttatggtcggcatgaggaggctagttcccaaatctctaagctggaataggtcata 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tgagtttatggtcggcatgaggaggctagttcccaaatctctaagctggactaggtcata 260
Query: 61 ttt-tctttataaaggcttcttgaagttcacatgcctctcctttcctgacagctttcttg 119
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttat-tttataaaggcttcttgaagttcacatgcctctcctttcctgacagctttcttg 319
Query: 120 actagaaaataagcacagaacttttgaccatagccatccctacagaaagcaactttttag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 actagaaaataagcacagaacttttgaccatagccatccctacagaaagcaactttttag 379
Query: 180 aatttggaagtggcttttgtatgcaggtcacatgtgtgtggtgtgtgtgtgtgtgtgtgt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aatttggaagtggcttttgtatgcaggtcacatgtgtgtggtgtgtgtgtgtgtgtgtgt 439
Query: 240 gtgtgtgtttggcaggaattttctagagaagcaagaagcactacttc 286
|| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 440 gt------ttggcaagaattttctagagaagcaagaagcactacttc 480
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
