Query= MSMg01no272_m01.b1 MSMg01no272_m01.b1 CHROMAT_FILE:
MSMg01no272_m01.b1 PHD_FILE: MSMg01no272_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:59 2005
(585 letters)
>mm_chr19_16033580_16034564
Length = 985
Score = 1036 bits (536), Expect = 0.0
Identities = 571/586 (97%), Gaps = 7/586 (1%)
Strand = Plus / Plus
Query: 4 ggaattcattatgcataccaggttagcctcaagctcacagagacctgcctgtccctgcct 63
|||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 203 ggaattcactatgcagaccaggttagcctcaagctcagagagacctgcctgtccctgcct 262
Query: 64 cccaggcgctggg-tcaaggtttgcatcatcatgcctagccccattttcttactgacaac 122
||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 263 cccaggcactgggatcaaggtttgcatcatcatgtctagccccattttcttactgacaac 322
Query: 123 gatgctgcttctggaaacaggtacaaacttagctcttccagagatagaccaccattcctt 182
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 323 gatgctgcttctggaaacaggtacaaacttagctcttctagagatagaccaccattcctt 382
Query: 183 tctccgacttggggagctccttgctcagggcttgaaccaaggtctgagaggcccactcac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tctccgacttggggagctccttgctcagggcttgaaccaaggtctgagaggcccactcac 442
Query: 243 tcggatatcctgcatttgtccggtggcagtctgtttcggatgcagagtttcatcttcaag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcggatatcctgcatttgtccggtggcagtctgtttcggatgcagagtttcatcttcaag 502
Query: 303 tgccttctgttcttgtataggtgtattaaccgtggaattcatctgcggacggcctaacag 362
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 503 tgccttctgttcttgtataggtgtattaaccgtggaattcatctgcggacgacctaacag 562
Query: 363 gtggaaatctgactgatctatgccagccatagtggcaagctgtccaagcctgcagacagg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 563 gtggaaatctgactgatctatgccagccatagtggcaagctgtccaagcctgcggacagg 622
Query: 423 agggaggaggaaaagacactcacttggggacaacttaagttcacccacgcctacaagcat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agggaggaggaaaagacactcacttggggacaacttaagttcacccacgcctacaagcat 682
Query: 483 gaaataggtatatacatgaacaccaagatctaaaactcatttttttttt------ggttt 536
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 683 gaaataggtatatacatgaacaccaagatctaaaactcatttttttttttcttttggttt 742
Query: 537 ttcgagacagggtttctctgtgtagccctggctgtcctggaactca 582
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttcgagacagggtttctctgtgtagccctggctgtcctggaactca 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no272_m01.g1 MSMg01no272_m01.g1 CHROMAT_FILE:
MSMg01no272_m01.g1 PHD_FILE: MSMg01no272_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:59 2005
(300 letters)
>mm_chr19_16161526_16162225
Length = 700
Score = 572 bits (296), Expect = e-168
Identities = 299/300 (99%)
Strand = Plus / Minus
Query: 1 aaagggaatctgtagatccaaagaaatctatagattccacaagagtgtgcatatttgtac 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaagggactctgtagatccaaagaaatctatagattccacaagagtgtgcatatttgtac 441
Query: 61 aagcatgtgtttgactattctggagtaaggttaattttccagtatattcagggcaccaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aagcatgtgtttgactattctggagtaaggttaattttccagtatattcagggcaccaga 381
Query: 121 aattataagcctgcaatatttttgagtactaatattgactgcaagtgaaaaattccatac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aattataagcctgcaatatttttgagtactaatattgactgcaagtgaaaaattccatac 321
Query: 181 aataaaagtttgtttcatgagcaaacattttaaaatattgtatgatgttatctctaggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aataaaagtttgtttcatgagcaaacattttaaaatattgtatgatgttatctctaggct 261
Query: 241 atacgtgtaaggcatgtatgaaacataaatgatctttgtgcttagacttggtttctatct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atacgtgtaaggcatgtatgaaacataaatgatctttgtgcttagacttggtttctatct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space: 201081
Effective search space used: 201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
