BAC Information

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BAC

Clone NameMSMg01-274C04
Chromosome19 (Build37)
Map Location 5,118,446 - 5,118,678
singlet/doubletsinglet
Overlap genenone
Upstream geneAip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2
Downstream geneLOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274C04.T7 (MSMg01no274_c04.b1)MSMg01-274C04.TJ (MSMg01no274_c04.g1)
ACCAG412950AG412951
length717725
length of high quality
(start - end)		233 (124 - 356)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no274_c04.b1 PHD_FILE: MSMg01no274_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:38 2005CHROMAT_FILE: MSMg01no274_c04.g1 PHD_FILE: MSMg01no274_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCCTATTTGCCAGTCACCTCCGAAGCCGGTAAGAGGTGCGTCTCT
AGAGCGCGGAGGGGTTTGGCGCGTCAGATGTGTGAGAGGTGGGTAATGGC
AACACCCACCTCACCAGCCCTTTGTGAGCATTAAGTCAATGCACTAAGAC
ATCGACAAAAACACTTGACAGTCAATCAATGTGGACCGACTCGCTCTGGA
ATCTGAGGAGGTCGGCCTTCTTGCTCCTCAGTCACTCTGGTCCGGGGTCG
GAGCTCCGCAGAGCGCACAGACCAGGAAGCTCTGGTCCGAGGGGGCGAGT
CCAGCCATTTTTTTCTGCGTCTCGCCTGGGCTGGCCCCACCCCGAAGCCG
GCCAGGCCTGCGGGGCCCCTTTAAAGCAACGAGCTGGCCGGCTGGAGCGT
GTTTCGCCCCCTCCGACGCCGCCGAGGTAGCGGCTTCACCTTTAAGGCGG
CGCGGGGACTGCTGGGAAGGCCGGCGGGATGGAGGCAGCGAGACGAGCTC
ACGGTCGAGGATCCGGGTGAAGCGGGACAGGAGCAGGAGCCGGAGCCGGG
CCAAAGCAGAAGGTGCAGGTCGGCGCCGGCCGGTTGGGCCGGGAGACCCA
GTCAAGCCGGACGGTGAGGAGCGGTTGCAGGTCGGCCTATAGGAGGAGTC
GTCGTGTTCTTGTTCGG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTCACCTAGAACCCATATGAGAA
AGTTGATTGTAGTGTTGGAGACATGACTCAGGGGTTAAGAGTGCTGGCTG
CTCTTTCAGAGGTTCAGTTCCCAGCAACCACAAGGTAGTGCACAGCAGTC
TATGGGATTTGGTGCCCTCTTCTGGCATAGAGGTGCACATGCAGACAGAG
CACTCAGATACATGGAGAAATAAATCTTGAAAAGAACAAAAAGAAGCTGA
CACCATTGCATATACTAGCAAGATTTTATCGAAAGGACCCAGATGTAGCT
GTCTCTTGTGTATTTTATGCCCGCCCCCCCACCAACACAGAAGTGGATGC
TCACAGTCAGCTAATGGATGGATCACAGGAATCCCAATGGAGGAGCTAGA
GGAAGTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAAC
ATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAACTGCATATGTA
TCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCAATGGACA
CGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGG
GAGTGGGTGGGTAGGGCGAGTGGGGCTTTCCTTTCTTTTTTCTTCTCTGT
TGTTTTTTTTCGTTCCCCCCCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_c04.b1 MSMg01no274_c04.b1 CHROMAT_FILE:
MSMg01no274_c04.b1 PHD_FILE: MSMg01no274_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:38 2005
         (233 letters)



>mm_chr19_5118246_5118878
          Length = 633

 Score =  443 bits (229), Expect = e-129
 Identities = 232/233 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagatgtgtgagaggtgggtaatggcaacacccacctcaccagccctttgtgagcatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tcagatgtgtgagaggtgggtaatggcaacacccacctcaccagccctttgtgagcatta 374

                                                                       
Query: 61  agtcaatgcactaagacatcgacaaaaacacttgacagtcaatcaatgtggaccgactcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 agtcaatgcactaagacatcgacaaaaacacttgacagtcaatcaatgtggaccgactcg 314

                                                                       
Query: 121 ctctggaatctgaggaggtcggccttcttgctcctcagtcactctggtccggggtcggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ctctggaatctgaggaggtcggccttcttgctcctcagtcactctggtccggggtcggag 254

                                                                
Query: 181 ctccgcagagcgcacagaccaggaagctctggtccgagggggcgagtccagcc 233
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 253 ctccgcagagcgcacagacctggaagctctggtccgagggggcgagtccagcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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