BAC Information

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BAC

Clone NameMSMg01-278I10
Chromosome19 (Build37)
Map Location 45,750,699 - 45,751,007
singlet/doubletsinglet
Overlap genenone
Upstream genePax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4
Downstream geneFgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278I10.T7 (MSMg01no278_i10.b1)MSMg01-278I10.TJ (MSMg01no278_i10.g1)
ACCAG416129AG416130
length673835
length of high quality
(start - end)
317 (4 - 320)45 (132 - 176)
definitionCHROMAT_FILE: MSMg01no278_i10.b1 PHD_FILE: MSMg01no278_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:53 2005CHROMAT_FILE: MSMg01no278_i10.g1 PHD_FILE: MSMg01no278_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GAGGATCCGCGGAATTCTACGTCCATCCAGTGGTTGCCGGCAAAGATCTA
CTTGGCTTTTTCTTTCTTCCTTTTCTTTCACACCTGAGCAGTGAGATTCT
GTTTGTGATGGGGGTTTTGCCCCCCTCGGTCTTTAATTCGTTCACAGGTG
GTTTCAAAGTGTCTGTCCTCGGCCACTGCCTTCTATAAACAAGCAGGAAT
TCGCGGGCTGCCGTGGGCCTAGGCGCCCCTCTCCTCCCAGCGCCCTCCTG
ATCTCACTTTGAAAATAGACTGTTTTGTGGACAGTAAAGTACAGTTCCTT
TTCAGAGATGAGATTAGAGGCTTGTTTTTTACTCCGCCCCCCCCCGGAGT
GTTTTTCTTTTTCTTCTGCTTTTTGCTTATCCAATACACAAAAAAAAGTC
TTTGTGTGTTGAGCCGTTTTACCATCTTTTATATCTTCACATATTTTTAC
ACCTCCCGCGTCTTTGCGTAACTCTGACTTTTTGTTGTATCTTATTGCGC
TGTATAATTTGTTTATTTCTCTATTCCTATTTCTCACACCCAACCCCTGG
TTTAATATACTCCCCGACCCCACTTTTTTGACGCCTATATTTTTTTTTTT
TTTTCCTCCCCTTTCCTTCCCCTTTTGTTTTTTTTTTTTCATCCCTTCTC
CGAATCCCTCTTTCCTTTCTTTN
TTTTTTTTTTTATCTTCTTTTTTATNCTTCATCTCTTTCTTTNCCACCCA
NNNTTTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCCTCATCCTGGCTTCA
AAGAAACTGAAACAACGTGGCCCCATGGCCTTCCGGGATCTGTAGTTCTC
TGCCTCATTACATGGGCTTCACCTGAGCCCCTGCGGTATGTTCAGGGCCT
ATGGCTGCTTCACGCCATGTGCCTTCAGAAGGAGGACTATTGGTGCTGAA
TGACAGCCATGCTTACAGGTCTCTCGGGGAGCGTGTATCCCCTCAAGCAA
CCTGCTTGGGCTTGTCACCGGTGACATATGTATGGAGCCAGGCGGGGCCA
GCTCTCAATCACTGCTTTGATGACTTCCAGAACAAACCACAGGGAGAATG
CCTATGGAGGGCATTAATCACCTGATGCAAAAAAAAGAAAAACGATCTTC
TTGATTGTTTTGTGATGGAATGGCCTGGCGTGTTCGCCCTGATACCAGTT
CTCTTGCCGTCTTTGCTGACGGCACTGCCCTTGTATTGCCTATGCGCAAG
GGTTTGGAGTCCTCCATCCACGTTTTTATTTCTCCCGCCCTGTCAGTATG
TTATAAAGTCCAGCTGCGCCCCCTTCGCATTTCCTCTCTCGTCGCTATTA
TACTGCTGCGTACAACCACTCGCCCACATGCTATATGTACACATACAAAA
TATCTTACTGAGAGTTCGCACATTCTTGACACTCTCCCTACTCTCATATT
CACCCTATCTAATTTTTTACATATAACATCATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_i10.b1 MSMg01no278_i10.b1 CHROMAT_FILE:
MSMg01no278_i10.b1 PHD_FILE: MSMg01no278_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:53 2005
         (317 letters)



>mm_chr19_45750491_45751207
          Length = 717

 Score =  574 bits (297), Expect = e-168
 Identities = 306/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 9   gaattctacgtccatccagtggttgccggcaaagatctacttggctttttctttcttcct 68
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattctacgtccatctagtggttgccggcaaagatctacttggctttttctttcttcct 268

                                                                       
Query: 69  tttctttcacacctgagcagtgagattctgtttgtgatgggggttttgcccccctcggtc 128
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tttctttcacacttgagcagtgagattctgtttgtgatgggggttttgcccccctcggtc 328

                                                                       
Query: 129 tttaattcgttcacaggtggtttcaaagtgtctgtcctcggccactgccttctataaaca 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tttaattcgttcacaggtggtttcaaagtgtctgtcctcggccactgccttctataaaca 388

                                                                       
Query: 189 agcaggaattcgcgggctgccgtgggcctaggcgcccctctcctcccagcgccctcctga 248
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 389 agcaggaattcgcgggctgccgtgggcccaggcgcccctctcctcccagcgccctcctga 448

                                                                       
Query: 249 tctcactttgaaaatagactgttttgtggacagtaaagtacagttccttttcagagatga 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tctcactttgaaaatagactgttttgtggacagtaaagtacagttccttttcagagatga 508

                    
Query: 309 gattagagg 317
           |||||||||
Sbjct: 509 gattagagg 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)