BAC Information

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BAC

Clone NameMSMg01-290C04
Chromosome19 (Build37)
Map Location 19,065,336 - 19,065,703
singlet/doubletsinglet
Overlap geneRorb
Upstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290C04.T7 (MSMg01no290_c04.b1)MSMg01-290C04.TJ (MSMg01no290_c04.g1)
ACCAG419499AG419500
length757756
length of high quality
(start - end)
712 (46 - 757)368 (389 - 756)
definitionCHROMAT_FILE: MSMg01no290_c04.b1 PHD_FILE: MSMg01no290_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:35 2005CHROMAT_FILE: MSMg01no290_c04.g1 PHD_FILE: MSMg01no290_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGTATCCATACCGAATGGCAGAGAAGCACCTGAAAAAATG
TTCAACATCCTTAATCATCATGGAACTGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCA
GAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGC
ATTTATTCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGAT
GCTCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAA
ATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAA
GGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACC
TAGGATACCCAAGATATAAGATACAATTTGCTAAACACATGAAACTCAAG
AAGAATGAAGACTGAAGTGTGGACACTATGCCTCTCCTTAGAATTGGGAA
CAAAACN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGTGTTTGATAGTCCTCTAAAGA
GTTGTTAAAATTATTCACACTAAGACGATCTGCTATTTCCTCTCCCAATT
TAAAATAATTATGCAAAATATCCTTCAAAATGCTTCATACATAAAGTTGA
CACTTGCATACACTTCTATAGCATTCCACTCGTAAATACACAAGACAAAT
AAGAGCGAAGCATCGCCATCTTTTGTTATTGCTTTATACAATGAATATAA
TCCTTGGCTTTAGGGTAACACGTTAACTTTTTCAAAATTAAATACACTAC
AGAAACAATTTTTTTTTGTAATACAAACAATTCACGGGAGGGAATTGGGG
GGTATAAATATGACTGAACTGCTTTCAGGATATTGTGATGGGGAAAGAGG
AAGTTTGCAGTTATTCCCATTTGTCCCTCTGTGTTGCACTCCTTAATCTA
TTAATACTTAGGGACACAGATAAGAGAAAGCCTTTGAACTTACATTTTCA
CTTAAAAATACCGTATTCATCAACAAACTTCACAAAGCTGTGAGCCTAAG
ATGGCTATTTCCTGAAGGACATCATCATTACATCATCATAATGGACACCA
CTGCCCCTGTTAACTGATTTTTGTCTAATGATTTAGGGAAGAAAGAACAT
GTCAAAATATTTGATAAATTATTATATCTTTATTAAAGGTATTTTTAAAA
TAATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_c04.g1 MSMg01no290_c04.g1 CHROMAT_FILE:
MSMg01no290_c04.g1 PHD_FILE: MSMg01no290_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:36 2005
         (368 letters)



>mm_chr19_19065136_19065903
          Length = 768

 Score =  696 bits (360), Expect = 0.0
 Identities = 366/368 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggaattggggggtataaatatgactgaactgctttcaggatattgtgatggggaaaga 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 agggaattggggggtgtaaatatgactgaactgctttcaggatattgtggtggggaaaga 260

                                                                       
Query: 61  ggaagtttgcagttattcccatttgtccctctgtgttgcactccttaatctattaatact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaagtttgcagttattcccatttgtccctctgtgttgcactccttaatctattaatact 320

                                                                       
Query: 121 tagggacacagataagagaaagcctttgaacttacattttcacttaaaaataccgtattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagggacacagataagagaaagcctttgaacttacattttcacttaaaaataccgtattc 380

                                                                       
Query: 181 atcaacaaacttcacaaagctgtgagcctaagatggctatttcctgaaggacatcatcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcaacaaacttcacaaagctgtgagcctaagatggctatttcctgaaggacatcatcat 440

                                                                       
Query: 241 tacatcatcataatggacaccactgcccctgttaactgatttttgtctaatgatttaggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacatcatcataatggacaccactgcccctgttaactgatttttgtctaatgatttaggg 500

                                                                       
Query: 301 aagaaagaacatgtcaaaatatttgataaattattatatctttattaaaggtatttttaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagaaagaacatgtcaaaatatttgataaattattatatctttattaaaggtatttttaa 560

                   
Query: 361 aataattc 368
           ||||||||
Sbjct: 561 aataattc 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)