Query= MSMg01no290_i06.b1 MSMg01no290_i06.b1 CHROMAT_FILE:
MSMg01no290_i06.b1 PHD_FILE: MSMg01no290_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:06 2005
(316 letters)
>mm_chr19_24441939_24442653
Length = 715
Score = 569 bits (294), Expect = e-166
Identities = 306/312 (98%), Gaps = 5/312 (1%)
Strand = Plus / Plus
Query: 5 gaattcatagtaaatattgtgtatttaaagagttaactactnttggtatctataaattat 64
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 205 gaattcatagtaaatattgtgtatttaaagagttaactact-ttggtatctataaattat 263
Query: 65 atctaacatagagtctttttttttctaccaaaacttagataagctggttttgcaaaatac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atctaacatagagtctttttttttctaccaaaacttagataagctggttttgcaaaatac 323
Query: 125 taagaattatatgtgtggcttacactgactgaagtatcttttgtttggtagaaagttggg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taagaattatatgtgtggcttacactgactgaagtatcttttgtttggtagaaagttggg 383
Query: 185 aatgagcaacacagaaatgcacacacacacacacacacacacacacacattatagtttct 244
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 384 aatgagcaacacagaaatgcacacacacacacacacacacacaca----ttatagtttct 439
Query: 245 ctgtcaccatcccacactgaccatctgtcccctctgttactatcagcaggattctcttgc 304
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctgtcaccatcccacactaaccatctgtcccctctgttactatcagcaggattctcttgc 499
Query: 305 cagtcagccaca 316
||||||||||||
Sbjct: 500 cagtcagccaca 511
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 715
Length adjustment: 9
Effective length of query: 307
Effective length of database: 706
Effective search space: 216742
Effective search space used: 216742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no290_i06.g1 MSMg01no290_i06.g1 CHROMAT_FILE:
MSMg01no290_i06.g1 PHD_FILE: MSMg01no290_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:06 2005
(289 letters)
>mm_chr19_24582642_24583330
Length = 689
Score = 536 bits (277), Expect = e-157
Identities = 286/289 (98%)
Strand = Plus / Minus
Query: 1 actaaggaattgtgtcagtggccccattcaaatatgtgaaatatttagccgcatttagca 60
|||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct: 489 actaaggaattgtgtcagtggccccattcaaatacgtgaaatatttagcagcgtttagca 430
Query: 61 gctttcagtgaaggttagagtgttgtgaatagatactgccatctatttttacaaggaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gctttcagtgaaggttagagtgttgtgaatagatactgccatctatttttacaaggaaga 370
Query: 121 ggaatttggtccaactggggactaggccattgtgcctctgtgccctggggacatgactgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ggaatttggtccaactggggactaggccattgtgcctctgtgccctggggacatgactgt 310
Query: 181 gaatgcagatgtttctaagagtcttaattctggcctgcaataatgataatgtgctcagta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gaatgcagatgtttctaagagtcttaattctggcctgcaataatgataatgtgctcagta 250
Query: 241 actctgtaaaaggtctaggaattgagagtaaaaaaccattgaagatctt 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 actctgtaaaaggtctaggaattgagagtaaaaaaccattgaagatctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
