BAC Information

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BAC

Clone NameMSMg01-290K16
Chromosome19 (Build37)
Map Location 41,170,114 - 41,170,320
singlet/doubletsinglet
Overlap geneTll2
Upstream geneCyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, Sorbs1, A930028N01Rik, Aldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10
Downstream geneTm9sf3, Pik3ap1, LOC100043167, EG627352, Lcor, AI606181, Slit1, Arhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055, Pi4k2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290K16.T7 (MSMg01no290_k16.b1)MSMg01-290K16.TJ (MSMg01no290_k16.g1)
ACCAG419882AG419883
length746745
length of high quality
(start - end)
234 (130 - 363)290 (76 - 365)
definitionCHROMAT_FILE: MSMg01no290_k16.b1 PHD_FILE: MSMg01no290_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:17 2005CHROMAT_FILE: MSMg01no290_k16.g1 PHD_FILE: MSMg01no290_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTC
TTCTCAGGCAGGTGGGGTTTTCCTGCAGAGGCCCGTAAGGCTCCTGGACC
CTGGGTTCCTGCAGCCTCCTCTCCTCCTTTTCCAACTTCCTCTCCATCCT
GCATCCTGTTAGCGGCCTTTATACCGTAGCCCAGTTCATCTGCTGGGGAT
ACCCCAACAGGTTGTCATACATCAAGTGCAGCTTAAAACAAAGAATTTTA
CTCAAAAAAAAAAAAAAAAGAATTTTACTCTAAGTTCTATGAGCCAGGAA
TCAGCATTCAAGGATTCCTCTAAGTACGCCGCCGCGCCGTTGGTCACATC
CCACTGACATCCCACTGACATCTGAACTGTTGGATGATGTGTTTGGATCT
CTGTCTCAGTGCTCAGCATTGAAGCAGGTCTATTATTTGTTGTTTTATAG
GTACTCAGAGTTCCGTCTCTGACTTTTGAGACAGGCAGTCTCTCTCTGAG
CAAGCTCTGTTTTGTGTTATGGGCATAACACTGACCTGAGCTCAGAGGCC
ACCTGTATAGCACCCAGCATTGCATAAGCTTCTTCCTGCTTGGGAAGACT
ATAAAGACAATGTCCTGTTATACCCCGCTTAGCTCTGGTTTGCCTTGACA
AGGGCTGCTATTTGGAGGAGACCCCGCCTATAGCAGTGATAACTAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGAAAGCTGGGCCTATGGAGTGA
GATCTCGTCTTTTAAAAATTGACACCCAGACAGACAGACAAACAAACAAA
CAAAAGGGTGGGTGATGTGGTTGCTTCCTGCTCTTCCAGAAGCCCCGAGT
TCAGTTCCCTGGGCCCACATTGTATGGCTCACAACCATGTAACTCCAGCT
CCGGGGCCTCTGATATCCTCTTTACATAGATGTAGCATATACTCACATAC
ATACATAACTACAAAATCAAAATGAAAATATTTTAAAAGTATAAATAAGT
ACAAAACTAATAATTAATTTTTAGGACACCCCCTTCTGGGTGGGAGGAAA
CACTGGTGACTGTACAGTGTCTTGTCTGAGAATAAACCCTCGGTGGCGCT
CAGCAGGAACAGGCTTTTCTGGATTAGGAGAGTCTCATATTAGTATTAAA
GTGAAATGTCTGTCCCCATGCCCAAATACAGCCTCTTTGATCGGATGTCT
TCCCAATATACCCTGTCTTCTAAGGGGTTCTTGGTTTGAGTACGCCCTCT
TAGGACCGAGACTCCCTTCCCACAGTGGTACAGGTCCATGCTAGCTCCTC
CGGTAGTGTATACAGAGACCGAACCCATGGATACTGGACTTTCACTGTCT
GAGCACAGGTGTGCGCCAGGAAATGAGCAGGCTCCACAGCCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_k16.b1 MSMg01no290_k16.b1 CHROMAT_FILE:
MSMg01no290_k16.b1 PHD_FILE: MSMg01no290_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:17 2005
         (234 letters)



>mm_chr19_41169947_41170580
          Length = 634

 Score =  329 bits (170), Expect = 1e-94
 Identities = 205/234 (87%), Gaps = 27/234 (11%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcccgtaaggctcctggaccctgggttcctgcagcctcctctcctccttttccaacttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ggcccgtaaggctcctggaccctgggttcctgcagcctcctctcctccttttccaacttc 315

                                                                       
Query: 61  ctctccatcctgcatcctgttagcggcctttataccgtagcccagttcatctgctgggga 120
           |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 314 ctctccatcctgcatcctgttagcggtctttataccgtagcccggttcatctgctgggga 255

                                                                       
Query: 121 taccccaacaggttgtcatacatcaagtgcagcttaaaacaaagaattttactcaaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||                    
Sbjct: 254 taccccaacaggttgtcatacatcaagtgcagcttaaaac-------------------- 215

                                                                 
Query: 181 aaaaaaaaaagaattttactctaagttctatgagccaggaatcagcattcaagg 234
                  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 -------aaagaattttactctaagttctatgagccaggaatcagcattcaagg 168


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)