Query= MSMg01no291_e15.b1 MSMg01no291_e15.b1 CHROMAT_FILE:
MSMg01no291_e15.b1 PHD_FILE: MSMg01no291_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:02 2005
(707 letters)
>mm_chr19_12908738_12909845
Length = 1108
Score = 348 bits (180), Expect = e-100
Identities = 378/538 (70%), Gaps = 145/538 (26%)
Strand = Plus / Minus
Query: 5 gaattcttttcc-tgcatcacttcatccattttaattttctaagaagtactattctcatg 63
|||||||||||| | ||||||||||||||| ||||| |||||||||||||||| |||||
Sbjct: 394 gaattcttttccaagaatcacttcatccattctaattctctaagaagtactattttcatg 335
Query: 64 ccaatctaaaaataatgcatcagtcctattttaaaggatcagcttccagtgaaggggttt 123
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 334 ccaatctaaaaataatgcatcagtcctattttaaaggatcaccttccagtgaaggggttt 275
Query: 124 ttgcccttaaactcagaatctaggattgtaaaagtctcttttttgctatataaaaataac 183
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ttgcctttaaactcggaatctaggattgtaaaagtctcttttttgctatataaaaat--- 218
Query: 184 catgtaattattttttttatttattttttattacatattttcctcaattacatttccaat 243
Sbjct: 218 ------------------------------------------------------------ 218
Query: 244 gctataccaaaagtcccccataccctcccccccacttccctacccactcattcccatttt 303
|||
Sbjct: 217 ---------aaa------------------------------------------------ 215
Query: 304 ttcaacttctaagaccatgtaattatttttaagattgtagaaagaaaataaagtacgccc 363
||||| |||||||||||||||||||||||||||||||||| | ||
Sbjct: 214 ---------------catgtgattatttttaagattgtagaaagaaaataaagtatgtcc 170
Query: 364 atgcccgccccatgagtgccttacttatagaagcatggctctatgtacagcctacttcat 423
||||| |||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 169 atgcctgcccaatgagtgccttacttat---------gctctatgtacagcctacttcat 119
Query: 424 aaacaaaccaataggatataagaaagtcaaagtcttcagtaacgtgtaaagttttctata 483
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 118 aaacaaaccaataggatataagacagtcaaagtcttcagtaacgtgtaaagttttctata 59
Query: 484 aattaatgtattttgaaagaacaagtgtttgtgacttggctttcctgtccaaactaaa 541
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 58 aattaatgtattttgaaagaacaagtgtttgtgacttggcttccctgtccaaactaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1108
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1098
Effective search space: 765306
Effective search space used: 765306
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no291_e15.g1 MSMg01no291_e15.g1 CHROMAT_FILE:
MSMg01no291_e15.g1 PHD_FILE: MSMg01no291_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:02 2005
(328 letters)
>mm_chr19_12756539_12757266
Length = 728
Score = 609 bits (315), Expect = e-179
Identities = 324/327 (99%)
Strand = Plus / Plus
Query: 1 gaaatttatttgttatattgtacatttctaaaccacaaattatgcagagcatagtgaaag 60
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 201 gaaatttatttgttatattgtacatttctaaagcaaaaattatgcagagcatagtgaaag 260
Query: 61 tggagtaaaaacaaagagatttattgcagatgaacaccctcatatgcactgctttgaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggagtaaaaacaaagagatttattgcagatgaacaccctcatatgcactgctttgaaca 320
Query: 121 tgccctgggacattcatgttttccatgttcactcatcactaataaagttgtgtcatctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgccctgggacattcatgttttccatgttcactcatcactaataaagttgtgtcatctct 380
Query: 181 tgtcactcacagtctgtcccctcaccccattcacactgatccccttgatggtcttcccag 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 tgtcactcacagtctgtcccctcaccccattcatactgatccccttgatggtcttcccag 440
Query: 241 ctgcacccacatccctacttcagaaaacttgagcttgcagctcccctgcatggacatttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgcacccacatccctacttcagaaaacttgagcttgcagctcccctgcatggacatttc 500
Query: 301 cttcactacattcacttctctgcttaa 327
|||||||||||||||||||||||||||
Sbjct: 501 cttcactacattcacttctctgcttaa 527
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space: 229361
Effective search space used: 229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
