Query= MSMg01no291_m04.b1 MSMg01no291_m04.b1 CHROMAT_FILE:
MSMg01no291_m04.b1 PHD_FILE: MSMg01no291_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:38 2005
(234 letters)
>mm_chr19_59187505_59188136
Length = 632
Score = 426 bits (220), Expect = e-124
Identities = 227/230 (98%), Gaps = 2/230 (0%)
Strand = Plus / Plus
Query: 1 taaatagtgtttcgaaatcatttaaatctgaggcaaacctgtgaaacaccattatattct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaatagtgtttcgaaatcatttaaatctgaggcaaacctgtgaaacaccattatattct 260
Query: 61 ccctaccgttcaattcagagagagagagagagagaagccgtgcgcgtgcattagtaagat 120
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 ccctaccgttcaattcagagagagagagagaga--agccgtgcgcgtgcattagtaagat 318
Query: 121 agtgctgcttgaattgaggcagagacggtgttgtgtagaaggaggccaatcggttggtgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agtgctgcttgaattgaggcagagacggtgttgtgtagaaggaggccaatcggttggtgc 378
Query: 181 tgacggttgtgtttctctgagacttaagtggtgtggcttgccctttccat 230
||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 379 tgacggttgtgtttctctgaggcttaagtggtgtggcttgccctttccat 428
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 632
Length adjustment: 9
Effective length of query: 225
Effective length of database: 623
Effective search space: 140175
Effective search space used: 140175
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no291_m04.g1 MSMg01no291_m04.g1 CHROMAT_FILE:
MSMg01no291_m04.g1 PHD_FILE: MSMg01no291_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:38 2005
(287 letters)
>mm_chr19_59351856_59352542
Length = 687
Score = 478 bits (247), Expect = e-139
Identities = 268/275 (97%)
Strand = Plus / Minus
Query: 13 aaaagaggttccattcttatctatttgattctggcccctatgttactcaaacaaacaaac 72
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 487 aaaagaggttccattcttatctatttgattctggtacctatgttactcaaacaaacaaac 428
Query: 73 taccaggtatgaaaagagtgccttgactttgggaaggcgctctacagataactgtccaaa 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 taccaggtatgaaaagagtgccttgactttgggaaggcgctctacagataactgtccaaa 368
Query: 133 cacgagggagaagcatgcacattctttgatacggatcattggcaaaatgaactatctcac 192
||||||||||| |||||||||||||||||||||||||| |||||||||| |||||| ||
Sbjct: 367 cacgagggagaggcatgcacattctttgatacggatcagtggcaaaatgtactatcacat 308
Query: 193 ccttcaatagggactgcttaaaaatacatatcactgggatgcggtcatggatcaagccat 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ccttcaatagggactgcttaaaaatacatatcactgggatgcggtcatggatcaagccat 248
Query: 253 agggtgcttggtgcacaagcgtgagggctgaactc 287
|||||||||||||||||||||||||||||||||||
Sbjct: 247 agggtgcttggtgcacaagcgtgagggctgaactc 213
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
