Query= MSMg01no294_e11.b1 MSMg01no294_e11.b1 CHROMAT_FILE:
MSMg01no294_e11.b1 PHD_FILE: MSMg01no294_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:55 2005
(249 letters)
>mm_chr19_42489507_42490155
Length = 649
Score = 427 bits (221), Expect = e-124
Identities = 237/249 (95%), Gaps = 11/249 (4%)
Strand = Plus / Plus
Query: 1 cctcctcctgccagaacttggctgcttgcttgtcagcgcatctggcagcagagaacaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctcctcctgccagaacttggctgcttgcttgtcagcgcatctggcagcagagaacaagg 260
Query: 61 ctgagccggactgacatcttaatgagggaagagcaaaggagatctgaagactgtctcccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgagccggactgacatcttaatgagggaagagcaaaggagatctgaagactgtctcccc 320
Query: 121 atatggagacagatgctcctgccagaaaatgagcttgtgctccaggtcaaggacccagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatggagacagatgctcctgccagaaaatgagcttgtgctccaggtcaaggacccagag 380
Query: 181 gccaaaacagggggtccaggcactgcctttagatctgaacagaatctgaagcctccttga 240
|||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 gccaaaacggggggtccaggcactgcctttagatctgaa-----------gcctccttga 429
Query: 241 tgtcttgct 249
|||||||||
Sbjct: 430 tgtcttgct 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no294_e11.g1 MSMg01no294_e11.g1 CHROMAT_FILE:
MSMg01no294_e11.g1 PHD_FILE: MSMg01no294_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:56 2005
(286 letters)
>mm_chr19_42653009_42653694
Length = 686
Score = 509 bits (263), Expect = e-148
Identities = 282/291 (96%), Gaps = 5/291 (1%)
Strand = Plus / Minus
Query: 1 aaggccagctgggatgacgtggcaaccctatcaaaacaaaacaaaacaccagcaaaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aaggccagctgggatgacgtggcaaccctatcaaaacaaaacaaaacaccagcaaaaaaa 248
Query: 61 ttagttgaatgatttggaagactaaataagtcactttagaaacaaac-----aataaaat 115
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 247 ttagttgaatgatttggaagactaaataagtcactttagaaacaaacaataaaataaaat 188
Query: 116 aaaataaaataaataataaaaaaaaacagcccttgggactattcacccccaaaaaatctg 175
||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 187 aaaataaaataaataattaaaaaaaacagccctcgggactattcacccaaaaaaaatctg 128
Query: 176 aagacatgctaaattttctcgtctttctttaaagatttgaagctataaattataggcgag 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 aagacatgctaaattttctcgtctttctttaaagatttgaagctataaattataggcgag 68
Query: 236 gtagtatgaaggtgacttccaagaactgtctaatcaatacaccaatggcta 286
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 gtagtatgaaggtgacttccaagaactgtctaatcaatacaccaatggcta 17
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
