BAC Information

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BAC

Clone NameMSMg01-294L20
Chromosome19 (Build37)
Map Location 11,475,139 - 11,475,541
singlet/doubletsinglet
Overlap genenone
Upstream geneSyt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a
Downstream geneLOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294L20.T7 (MSMg01no294_l20.b1)MSMg01-294L20.TJ (MSMg01no294_l20.g1)
ACCAG422835AG422836
length731732
length of high quality
(start - end)		316 (51 - 366)602 (81 - 682)
definitionCHROMAT_FILE: MSMg01no294_l20.b1 PHD_FILE: MSMg01no294_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:29 2005CHROMAT_FILE: MSMg01no294_l20.g1 PHD_FILE: MSMg01no294_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACCTAAACAGTGAATATTTTGATGTATACTGAAACAGCAG
GGGAGGAAGGACCTCAGGTAAAACCTTTGAGGAGCCAGTGAGATGGTTCA
GTGGGTAAGGACATATGTTGTCTAGTCTGATGACCAGTGTGTGATACTCA
GACCCCATATGTTGGAAAGAACTGAGTCTTTCAAATTGCCCTCTGATCTC
CATGTATGTGTGCATGTATGTATGCATGCATGCATGCACGAACTCATGCT
CACGCGTGTGAGTGCGCGCGCACACACTCTCAGATACACACAGACACACA
AACATACACATGTATACATTTTTTTTACACCCCCCCCCCCTTTGTTTGAT
TTCTGAATGAACTACAAAGAAGTCTTTGGAAAGTATGACTACTTCAGCAT
CTCCTGGTATCCCCATGAGTACATTTGTTTGTAAAGACTGCTGCGACTGA
GGTGACAGGGGCTGTCTTGTATAAGTAAAACAGTTCTCTGTCCAGGCAAT
GCTAGTCACGAGAAAAGGAATCAATGGAAATGAAGTCACTCCTAGAATAT
TAGTCACATGCCTGATAACACTCTGTCACTGTTCCACCAACTAGATGGAG
ACATAAAACCATAAGAAATCAAGTGGCCAAGATACAGTTCACAGGACTCA
TAAAGGCCAATAAGGCGAAGCGCCCCAGTGA

NCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGGAAGAACAACAGAGT
CAACTAACCTGGGACCTTGGGGCCCTTACAGACTGAACCACAAACCAAAG
AACATACATGGGCTGGTTCTAGGCTCCTCATACACATGTAGCAGATGGGC
AACTTGGTTGTCATGTGGGTCTCAAACAACTGGAGCAGGGGCTATCCCAA
AAGCTGCTGCCTGTATGTGGGACATGTTTTTCTAGCTGGGCTTCCTTGCC
TGGCCTCAGTGAGAGAGGAAGTGCCCAGCCATGCAGAGACTTGAAGTACC
AGGGTGAGGGGCTACCCAGGGGGATCCCCACCTGCTCAGAAGAGAAGGGA
GCAATGAGGGGAAGTATTGTGGAAAGGGGTAACCTGAAGGAGGGCAGTGA
GTGGGGTATAACATGAATAAGAAAAAAGAAAGAACTGCTTAGGATAACTT
TTGTTTAGTTCCCTCAGTCTATTTTATATCCTGAGATTTGACCCAATGCC
CCTTGTTAAGATTTAAATACTATTACTTTAACATTCATGTAGTTATGTGT
CTTCAAATCATTATTTTATACTAAATAGTAATATATGCAAGCAAAACATA
AATAAGAACAATCTCACAAAGATAGCTTAGGGTAGATGAAACATAAAAAC
AAGAGTGCAGGTTGTATAATTTGATTTATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_l20.g1 MSMg01no294_l20.g1 CHROMAT_FILE:
MSMg01no294_l20.g1 PHD_FILE: MSMg01no294_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:29 2005
         (602 letters)



>mm_chr19_11474540_11475541
          Length = 1002

 Score =  758 bits (392), Expect = 0.0
 Identities = 401/404 (99%), Gaps = 1/404 (0%)
 Strand = Plus / Minus

                                                                        
Query: 199  tttctagctgggcttccttgcctggcctcagtgagagaggaagtgcccagccatgcagag 258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 tttctagctgggcttccttgcctggcctcagtgagagaggaagtgcccagccatgcagag 943

                                                                        
Query: 259  acttgaagtaccagggtgaggggctacccagggggatccccacctgctcagaagagaagg 318
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942  acttgaagtaccagggtgaggggctacccagggggatccccacctgctcagaagagaagg 883

                                                                        
Query: 319  gagcaatgaggggaagtattgtggaaaggggtaacctgaaggagggcagtgagtggggta 378
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 882  gagcaatgaggggaagtattgtggaaaggggtaacctggaggagggcagtgagtggggta 823

                                                                        
Query: 379  taacatgaataagaaaaaagaaagaactgcttaggataacttttgtttagttccctcagt 438
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 822  taacatgaataagaaaaaa-aaagaactgcttaggataacttttgtttagttccctcagt 764

                                                                        
Query: 439  ctattttatatcctgagatttgacccaatgccccttgttaagatttaaatactattactt 498
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 763  ctattttatatcctgagattagacccaatgccccttgttaagatttaaatactattactt 704

                                                                        
Query: 499  taacattcatgtagttatgtgtcttcaaatcattattttatactaaatagtaatatatgc 558
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703  taacattcatgtagttatgtgtcttcaaatcattattttatactaaatagtaatatatgc 644

                                                        
Query: 559  aagcaaaacataaataagaacaatctcacaaagatagcttaggg 602
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643  aagcaaaacataaataagaacaatctcacaaagatagcttaggg 600


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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