BAC Information

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BAC

Clone NameMSMg01-295I07
Chromosome19 (Build37)
Map Location 51,633,902 - 51,634,208
singlet/doubletsinglet
Overlap genenone
Upstream geneSorcs1
Downstream geneLOC100042924, LOC100042928, LOC668536, LOC100042936, Ins1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295I07.T7 (MSMg01no295_i07.b1)MSMg01-295I07.TJ (MSMg01no295_i07.g1)
ACCAG423390AG423391
length756752
length of high quality
(start - end)
311 (51 - 361)287 (79 - 365)
definitionCHROMAT_FILE: MSMg01no295_i07.b1 PHD_FILE: MSMg01no295_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:28 2005CHROMAT_FILE: MSMg01no295_i07.g1 PHD_FILE: MSMg01no295_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAACATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGAGTAGCTATACTCAATTTAATAGGACTAAGTAATGAAA
TAAAACATGGGAAAGAAAAGATAGAAAAGTTTACATGAGTACAATATCAG
GCAAAAGAGTGATGCATGGGACATTCAGAAATAACAAAACATATGTCCAA
ATCAACTATGTATGAAAAGATATATGTCATAATTGTATTATATATAAATC
ACATAATTGCATAATAAATTAAAATATAGAGTAAAAGGATAACAGATATC
TTGATGAAGTTAGATATTTCAATAGCAGCATCAAAATTGAAAGAAATAGT
AAACAGAAATAAAGTTATGCACACACCTGACGAACATCAATAGCTTTCTA
ATAACAGATTATTTTCCCACATAGATCAAACATTTACCAAGAAAGACATT
ATAAGAGAATATAAAATTACTGTTTTTATTCTGGTTTGAAATCATATATT
TTCATGATAATTGAGTGACCAAAGTAAAATCAATAAGTAAAAGAAACGTG
AAAAACTTGAACAATAACACTAAGACAAGTTTGCAATAAGTACCTTGATC
AGTTCCCATTAAAACACTGATGTAAAAATGCTCATTTTAGAACAAAAAAG
ATGCCACAATAATGTCTTGAGATTTGACCTAGATAAACTAAGGAGCAAAT
TAAGGACAACTAAACATAAGGAAAGAAATAAAATACATTTTGACAAAAAA
AATAGA
ATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATCAAAACAACTCTGAGATT
CCACCTTACACCAAAAAGAATGGCTAAGATCAAAAACTCAAGTGACAGCA
CATGTTGGTGAGGATGTGGAGAAAGAGGGACACTGGTTGGATTGCAAATT
GCTATAGCCACTCTGGAATCAATCTGGAGATTCCTCAGAAAGTTGGAAAT
AGATCTACCTGAAGAACCAGCTATACCACTTGAGGGCATATACCTAAAAC
ATGCCCCGCCATACTGCAGGAGCACGTGTTCCACTATGCTCATAGCAGTC
TCATTTGTGATATTCAGGAACTATACCCAACTCAGATGTCCAACAGTGGA
AGAATGGGTACAGAACCCATGGCCCGTTTACACAATGGAGTACTATCCAG
GTATTAAGAATGAGGCCATCATGAGCTTTGCCCACAAATGGATGGAACTA
GAACATATCATCCTGAGTAAGAAAACTCATATCCAAAAGTACATGCATGG
TGTGTACTCTTTAATCCGTGAATATAGCCCAAAATGCACAGCACGTTTAG
GATTCAAATCACAGAAGGTTAACAAGCCAAAGGGCCCAGATGGGGATGCC
TCAATTCCACATAGGAGGGAGAAAAATGAAATCATGAAGGGCAGAGGGAG
GGCAGTACCTTGGTAGAAGAGGTGACAGGGAAGGAGAAAGGGAACAGGAT
CA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_i07.b1 MSMg01no295_i07.b1 CHROMAT_FILE:
MSMg01no295_i07.b1 PHD_FILE: MSMg01no295_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:28 2005
         (311 letters)



>mm_chr19_51633698_51634408
          Length = 711

 Score =  563 bits (291), Expect = e-165
 Identities = 303/307 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagagtagctatactcaatttaataggactaagtaatgaaataaaacatgggaaa 64
           ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagagtagctatactcaagttaaaaggactaagtaatgaaataaaacatgggaaa 264

                                                                       
Query: 65  gaaaagatagaaaagtttacatgagtacaatatcaggcaaaagagtgatgcatgggacat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaaaagatagaaaagtttacatgagtacaatatcaggcaaaagagtgatgcatgggacat 324

                                                                       
Query: 125 tcagaaataacaaaacatatgtccaaatcaactatgtatgaaaagatatatgtcataatt 184
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 325 ccagaaataacaaaacatatgtccaaatcaactatgtatgaaaagatatatgttataatt 384

                                                                       
Query: 185 gtattatatataaatcacataattgcataataaattaaaatatagagtaaaaggataaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtattatatataaatcacataattgcataataaattaaaatatagagtaaaaggataaca 444

                                                                       
Query: 245 gatatcttgatgaagttagatatttcaatagcagcatcaaaattgaaagaaatagtaaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gatatcttgatgaagttagatatttcaatagcagcatcaaaattgaaagaaatagtaaac 504

                  
Query: 305 agaaata 311
           |||||||
Sbjct: 505 agaaata 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)