BAC Information

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BAC

Clone NameMSMg01-296L13
Chromosome19 (Build37)
Map Location 38,117,045 - 38,117,356
singlet/doubletsinglet
Overlap geneFer1l3
Upstream geneCpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281
Downstream geneCep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483, Plce1, EG667587, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296L13.T7 (MSMg01no296_l13.b1)MSMg01-296L13.TJ (MSMg01no296_l13.g1)
ACCAG424251AG424252
length744750
length of high quality
(start - end)
319 (44 - 362)286 (75 - 360)
definitionCHROMAT_FILE: MSMg01no296_l13.b1 PHD_FILE: MSMg01no296_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:59 2005CHROMAT_FILE: MSMg01no296_l13.g1 PHD_FILE: MSMg01no296_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAAGGGGTCTATTAAAGTCCAGCCAGTCTAAACCTTCCCCCTTGTTT
TGCAGAGGAACGCTGAGACACAGAGGAATGATGATGTCATTTGCCCAAGG
TTATCCAGTGCTGTAGAGCCAGACTCCCAAGCTGCAGATGTGTTTCAGAG
CTCCTTTAGGGTGGGCAATCCCAAAGTTACCGAACATATCCAAACAGCCC
AACTCCTGGAGATTCAGAACACCAGAGAGAGTTCCTTCATACCCTACGCA
AAGCCCAAATGATGGTAAAAGCTGTATGGAACTGGTTAATAGTGTAATGG
TGCCTCCATTAATAATGACCCGCCCCCCCCGCTACTCATTTCTCACAGGG
AGAGAAAGTTTCACAACGCACCCACATAAATACGCACTAACTTTGAACCG
ACAAAGACCTTCATACTTGAAATCCAGAAGAGTAGCAAATAGAGGTTCCC
GAGAGTTTACAGAAATGTCAGGCCATTCGGTGATTCTCCGTGCCCTAGGG
AAAGTTAGATTCCCTCAGTAGTGATCGACAGTGACCTGCCCAGGTAAACC
TGGGACCGCCAGAGGAACAGAGTTGGCTTGGCTTCACCAGATGCCAAGAG
CTGACTTGAAGGATATTCTAACGTCTAGCCTTCCATTAAAGGGTTTCAGA
AAGAGAAGAAAACGTCGCTCGTTTTACCCTTATAATTGATTGAA
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGCGCTAAACTGTCTGGTCCTGGGCT
TTTTTGGTTAGGAGACTTTTAAAGACTGCTTCTATTTGTTTACAGGTTAT
GGGACTGTTTAGGTGGTTTATCTGATCCTGATTTAACTCTGGTACTTGGT
ATCTGTCTAGAAAGTTGTTCATTTCATCCAGATTTTCCAGTTTTATTGAG
TTTAGGCTCTTGTAGTAGGATCTGATGATTTTTTAAATATCCTGGGCTTC
TGATGTTATATCTCCCTTTTCATTTCTGATTTTGTTAATTTGAATACTGT
CTCTGTGCCTTTTGTTTAGCCCGCACCCCCCCCAATCTATCTTTTGATTT
TTCTCAAAGAACTACCCCCCAGTTTTGATGATCTTTGGATAGGTCTGGTT
GTTTCCACTTGGTTGATTTCAGCCCTGAGTTTGATTATTTCCTGCCATCT
ACTCCTCTTGGGTGAATTTGCTTCTTTCTGTTCTAGAGCATTCCGGTGTG
CTGTTAAGCTTCTAGTGTATGCTCTCTCCAGTTTCTTTTTGGAGGCACTC
AAGTTATGAGTTTTCCTCTTACCAGTGCTTTTATTGTGTTCCTTACCTTC
TGATTATTTTGTGCCTTTTATTTTCCTTAACATTCTAACGCCTTTAATTC
CTTTATTTCTTCCTTTGACCTCCTTACCCCTTGTGCTTTTGTTTTTTTTN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_l13.b1 MSMg01no296_l13.b1 CHROMAT_FILE:
MSMg01no296_l13.b1 PHD_FILE: MSMg01no296_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:59 2005
         (319 letters)



>mm_chr19_38116842_38117560
          Length = 719

 Score =  572 bits (296), Expect = e-168
 Identities = 308/312 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaaggggtctattaaagtccagccagtctaaaccttcccccttgttttgcaga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaaggggtctattaaagtccagccagtctaaaccttcccccttgttttgcaga 263

                                                                       
Query: 64  ggaacgctgagacacagaggaatgatgatgtcatttgcccaaggttatccagtgctgtag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggaacgctgagacacagaggaatgatgatgtcatttgcccaaggttatccagtgctgtag 323

                                                                       
Query: 124 agccagactcccaagctgcagatgtgtttcagagctcctttagggtgggcaatcccaaag 183
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 324 agccagactcccaagctgcagatgtgcttcagagctcctttagggtgggcaatcccaaag 383

                                                                       
Query: 184 ttaccgaacatatccaaacagcccaactcctggagattcagaacaccagagagagttcct 243
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 384 ttaccgaacatatccaaacagcccaactcctggagattcagaacactagagagagttcct 443

                                                                       
Query: 244 tcataccctacgcaaagcccaaatgatggtaaaagctgtatggaactggttaatagtgta 303
           |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 444 tcatgccctacgcaaagcccaaatgatggtaaaagcagtatggaactggttaatagtgta 503

                       
Query: 304 atggtgcctcca 315
           ||||||||||||
Sbjct: 504 atggtgcctcca 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)