BAC Information

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BAC

Clone NameMSMg01-297D05
Chromosome19 (Build37)
Map Location 45,764,920 - 45,765,162
singlet/doubletsinglet
Overlap genenone
Upstream genePax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4
Downstream geneFgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297D05.T7 (MSMg01no297_d05.b1)MSMg01-297D05.TJ (MSMg01no297_d05.g1)
ACCAG424602AG424603
length730727
length of high quality
(start - end)
245 (80 - 324)250 (73 - 322)
definitionCHROMAT_FILE: MSMg01no297_d05.b1 PHD_FILE: MSMg01no297_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:35 2005CHROMAT_FILE: MSMg01no297_d05.g1 PHD_FILE: MSMg01no297_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGTAGCTAGGCGG
AATTCGGCACACCTTTACTNAAAAACTTTCAAATAGCCCTCCTCTCTCTC
CCCGTGGAAGTGTTCTTAGGGGCTTTGGCTTGCATTATTGAGCAGTGGGG
CAGGTTTCTCTCTCTCCCCGGGGGATGTTAGTTTATGGCCCAGCATCTCT
CTCCACCTCTGGAGTGTTTTTAGCTAAGGCAGGTTGTGTCCCGTCATCAC
GCACACTATTGAAATAACGACCGATGTGGGCAAGAAAACCCGAGGGAAGT
CTGACCTCTGCCTGGAACCTCTTTTGTATTTATGACCCTGACCTTGCTCC
TGTGCTTTGGAGAGACCATTTGGGAAAAACTTCATGTCTCAAAAATACAT
ATGAATTTGAGAGTTCCTCTGGCTGGAATGAGGAGGGGGATGCCGTATGG
CCAATATGGGCTTTATATATGTAAATATTTGAGAAAGTCTTGTAACTGGC
TAGCAGAAAGCAGGGCTCCCTTAAAAATGACAAGAGTGGCCCCTAAGGAA
AATGACTCTGCCTGACTGGAGGAAACAAACTGAGAAGACTCTAGGGACAG
GAGCTTCTTGAAGCAGTTTATTTTATTCATTTTGTTACAATTATTAGCGC
ATATATGTCACACTTTCTTGTGTGCACACTCATGTACATATTGCCTGTCT
GTACCATGGCACACCTGTGGCCATCAGAGA
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTTGCTGCTCTTCCAAAGGCCCTGCAT
TCAGTTTTTCAGTGTCTAACATCACATGCAGTACCTCACAACTTCCTGTC
ACTCCTCTTCCAGGGCATTTAATGGTACTTCTGGCCTCCACAGGCACCTG
CACACATAAGCCATACACACAGAAATAAATGGATGAACAAATCTATTGTA
GATGTAAAGACATTTATAAATAAGAAGTCAAAGTTGATAAGGTGCTGTAT
GCCTATAATCCTAGCAGTTAGGAGTCTAATACAGGAGGACATGAGTTTAG
AGGCCAGCCTGTGCTGCACAGCAGGATCCCACCTCAGAAATCCAAGGGCT
GGGATTGGAAGAGTGGTCTAACATACACTTGACCCTAGGCTGCTTCACCA
CCACCACCCAGGAAAAAGGCTGAAATCTGTCTTCCTGAAATTCCTGTGTT
GAACTTGACGTCTCTAATATTTTACAATCTGATTGTATTTGAAGGCTGAG
CTTTTTAAAAGGGTGATTAGGATCAGTTGAATTCATTGAGAATTGGCATT
GATCCTATGTGACTTGCTTTTCCTCAAATATAATATGATCATGTGCACGT
ATATGCAGTGCTTGCAAAGGTGGAGGAGACCCCCGTCTATGACGGAAGCT
GGTTAAGAGTCTGAGAATCAGACCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_d05.b1 MSMg01no297_d05.b1 CHROMAT_FILE:
MSMg01no297_d05.b1 PHD_FILE: MSMg01no297_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:35 2005
         (245 letters)



>mm_chr19_45764720_45765364
          Length = 645

 Score =  424 bits (219), Expect = e-123
 Identities = 237/243 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatagccctcctctctctccccgtggaagtgttcttaggggctttggcttgcattatt 60
           |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 443 caaatagccctcctctctctccccgtggaaatgtacttaggggctttggcttgcattatt 384

                                                                       
Query: 61  gagcagtggggcaggtttctctctctccccgggggatgttagtttatggcccagcatctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gagcagtggggcaggtttctctctctccccgggggatgttagtttatggcccagcatctc 324

                                                                       
Query: 121 tctccacctctggagtgtttttagctaaggcaggttgtgtcccgtcatcacgcacactat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct: 323 tctccacctctggagtgtttttagctaaggcaggttgtgtcccgtcatcatgcacactaa 264

                                                                       
Query: 181 tgaaataacgaccgatgtgggcaagaaaacccgagggaagtctgacctctgcctggaacc 240
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 263 ggaaataacgaccgatgtgggcaagaaaacccgcgggaagtctgacctctgcctggaacc 204

              
Query: 241 tct 243
           |||
Sbjct: 203 tct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)