BAC Information

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BAC

Clone NameMSMg01-297P11
Chromosome19 (Build37)
Map Location 60,888,139 - 61,043,284
singlet/doubletdoublet
Overlap gene1810055E12Rik, Sfxn4, Prdx3, Gprk5, LOC671322
Upstream geneRab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik, Prlhr, 2700078E11Rik, Nanos1, Eif3s10
Downstream geneBC029127, LOC100043112, EG547091, LOC433261, EG633057, Csf2ra, LOC100043120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297P11.T7 (MSMg01no297_p11.b1)MSMg01-297P11.TJ (MSMg01no297_p11.g1)
ACCAG425146AG425147
length740742
length of high quality
(start - end)		655 (46 - 700)667 (76 - 742)
definitionCHROMAT_FILE: MSMg01no297_p11.b1 PHD_FILE: MSMg01no297_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:32 2005CHROMAT_FILE: MSMg01no297_p11.g1 PHD_FILE: MSMg01no297_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(60,888,139 - 60,888,789)(61,042,619 - 61,043,284)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTTGAATAGCCTCTCTCCTGAGGTTCTAATTAATACAAGTAGGA
CACTACTGTTCCTGGCAGAGTGCAATCGTGTTGCATAGGCTTACCAAAGA
TCTGCTGTTATTATTTTTCAGGAGCTCAAAGAAGTGTCTTTATCTTGTAC
TCGCTTTTTCTTTTTGTGTAAAATTTAAATTTTTTTGGTGTGAATGTTTG
CCTGACTGTATGTTTGTGCACCTTGTTTCCCAGTGGAGGTCAGAAGAGAT
CATCAGATCCTCTGGACCTGGAGCTCATATAGGTGCCGGAAATAGAACCC
AATCCTCTTAAAGAACAGCTAGTGCTCTTAACCGCAGAGCTATCTCTAGT
CCTCTTGTATTCATTTCTTCTTCTTTTTTCTTTTTTTCTTTTTCTTTTTT
TTTTTCTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGC
TGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCC
TCCTGCCTCTGCCTCCCAAGTTGCTGGGATTAAAGGCGTGCGCCACCACC
GCCCGGCATCTAATGTGATTTTTAAATTGCTTGAAAACAAAACCTATGTA
CCTCAGGCATCTTGGACCTGTCAGCACTTCAGAATTAAGACTGAATTAAA
CTGTGAAGATAAAAATGACTTACAAATGGGCAGGGGTTGA

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGGTTCCTCCCTCTAGAACGCAGG
AGCAACTGGGCAAAGCCTAAGAGGGAGCCCACTGCTCAGACCTGGGCCAG
AGACCACAGCTAGCACCAAACTAAGAAGAGCTTCCAGGTCCGTGTCCTAT
CGATGGATCTTAAAATTGAATGCACTTGGGAAGGTTTTCCAGTGAGACAT
GAGCCAGGGTGTGTCAGGCTGAATCCGTGTGACCAGAGAGTGAAGATGGA
GGTTAGTGCTCCATTATTCAATGATCCTCCATCCCCTCTTGGAGAACCAG
GAAAGCCTTTCAGTGAACTGTGGAATTATGAAGTTGTGGAAGCATTTTCT
TTGAATGATACAACTAAGCACCATTTAGAAGTCGAACTTTGTCCGCATGG
ACAACATTTAGTTCTTTTACTAGCTGGAAGAAGAAACGTTTGGAAAAAAG
AACTTGCATTATCATTCAAAGCATCCAGAGGAGGAACTAATTGGGAAGGT
GAAGCTTATATTCCTTGGAGTTATTTCCCACCAAATGTGACAAAATTTAA
CTCATTTGCAATCCATGGATCAAATGATAGGAGAGTTTATGAGGCACTTT
ACCCTGTGCCACAGCATGAGCTACATACAACAAGGACAAAAACCTGACTT
CCATCGTCTAGAATATTTCAAGCCTTTCAGTTTTAACACACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_p11.b1 MSMg01no297_p11.b1 CHROMAT_FILE:
MSMg01no297_p11.b1 PHD_FILE: MSMg01no297_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:32 2005
         (655 letters)



>mm_chr19_60887935_60888989
          Length = 1055

 Score = 1251 bits (647), Expect = 0.0
 Identities = 650/651 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctttgaatagcctctctcctgaggttctaattaatacaagtaggacactactgt 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctttgaatagtctctctcctgaggttctaattaatacaagtaggacactactgt 264

                                                                       
Query: 65  tcctggcagagtgcaatcgtgttgcataggcttaccaaagatctgctgttattatttttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcctggcagagtgcaatcgtgttgcataggcttaccaaagatctgctgttattatttttc 324

                                                                       
Query: 125 aggagctcaaagaagtgtctttatcttgtactcgctttttctttttgtgtaaaatttaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggagctcaaagaagtgtctttatcttgtactcgctttttctttttgtgtaaaatttaaa 384

                                                                       
Query: 185 tttttttggtgtgaatgtttgcctgactgtatgtttgtgcaccttgtttcccagtggagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttttttggtgtgaatgtttgcctgactgtatgtttgtgcaccttgtttcccagtggagg 444

                                                                       
Query: 245 tcagaagagatcatcagatcctctggacctggagctcatataggtgccggaaatagaacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcagaagagatcatcagatcctctggacctggagctcatataggtgccggaaatagaacc 504

                                                                       
Query: 305 caatcctcttaaagaacagctagtgctcttaaccgcagagctatctctagtcctcttgta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caatcctcttaaagaacagctagtgctcttaaccgcagagctatctctagtcctcttgta 564

                                                                       
Query: 365 ttcatttcttcttcttttttctttttttctttttctttttttttttctttttttggtttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttcatttcttcttcttttttctttttttctttttctttttttttttctttttttggtttt 624

                                                                       
Query: 425 tcgagacagggtttctctgtatagccctggctgtcctggaactcactttgtagaccaggc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcgagacagggtttctctgtatagccctggctgtcctggaactcactttgtagaccaggc 684

                                                                       
Query: 485 tggcctcgaactcagaaatcctcctgcctctgcctcccaagttgctgggattaaaggcgt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tggcctcgaactcagaaatcctcctgcctctgcctcccaagttgctgggattaaaggcgt 744

                                                                       
Query: 545 gcgccaccaccgcccggcatctaatgtgatttttaaattgcttgaaaacaaaacctatgt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gcgccaccaccgcccggcatctaatgtgatttttaaattgcttgaaaacaaaacctatgt 804

                                                              
Query: 605 acctcaggcatcttggacctgtcagcacttcagaattaagactgaattaaa 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 acctcaggcatcttggacctgtcagcacttcagaattaagactgaattaaa 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no297_p11.g1 MSMg01no297_p11.g1 CHROMAT_FILE:
MSMg01no297_p11.g1 PHD_FILE: MSMg01no297_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:32 2005
         (667 letters)



>mm_chr19_61042419_61043485
          Length = 1067

 Score = 1280 bits (662), Expect = 0.0
 Identities = 665/666 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggttcctccctctagaacgcaggagcaactgggcaaagcctaagagggagcccactgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 ctggttcctccctctagaacgcaggagcaactgggcaaagcctaagagggagcccactgc 807

                                                                       
Query: 61  tcagacctgggccagagaccacagctagcaccaaactaagaagagcttccaggtccgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tcagacctgggccagagaccacagctagcaccaaactaagaagagcttccaggtccgtgt 747

                                                                       
Query: 121 cctatcgatggatcttaaaattgaatgcacttgggaaggttttccagtgagacatgagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 cctatcgatggatcttaaaattgaatgcacttgggaaggttttccagtgagacatgagcc 687

                                                                       
Query: 181 agggtgtgtcaggctgaatccgtgtgaccagagagtgaagatggaggttagtgctccatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 agggtgtgtcaggctgaatccgtgtgaccagagagtgaagatggaggttagtgctccatt 627

                                                                       
Query: 241 attcaatgatcctccatcccctcttggagaaccaggaaagcctttcagtgaactgtggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 attcaatgatcctccatcccctcttggagaaccaggaaagcctttcagtgaactgtggaa 567

                                                                       
Query: 301 ttatgaagttgtggaagcattttctttgaatgatacaactaagcaccatttagaagtcga 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 566 ttatgaagttgtggaagcattttctttgaatgatacaactaagcagcatttagaagtcga 507

                                                                       
Query: 361 actttgtccgcatggacaacatttagttcttttactagctggaagaagaaacgtttggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 actttgtccgcatggacaacatttagttcttttactagctggaagaagaaacgtttggaa 447

                                                                       
Query: 421 aaaagaacttgcattatcattcaaagcatccagaggaggaactaattgggaaggtgaagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aaaagaacttgcattatcattcaaagcatccagaggaggaactaattgggaaggtgaagc 387

                                                                       
Query: 481 ttatattccttggagttatttcccaccaaatgtgacaaaatttaactcatttgcaatcca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttatattccttggagttatttcccaccaaatgtgacaaaatttaactcatttgcaatcca 327

                                                                       
Query: 541 tggatcaaatgataggagagtttatgaggcactttaccctgtgccacagcatgagctaca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tggatcaaatgataggagagtttatgaggcactttaccctgtgccacagcatgagctaca 267

                                                                       
Query: 601 tacaacaaggacaaaaacctgacttccatcgtctagaatatttcaagcctttcagtttta 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tacaacaaggacaaaaacctgacttccatcgtctagaatatttcaagcctttcagtttta 207

                 
Query: 661 acacac 666
           ||||||
Sbjct: 206 acacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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