Query= MSMg01no299_d16.b1 MSMg01no299_d16.b1 CHROMAT_FILE:
MSMg01no299_d16.b1 PHD_FILE: MSMg01no299_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:06 2005
(671 letters)
>mm_chr19_50348489_50349557
Length = 1069
Score = 1251 bits (647), Expect = 0.0
Identities = 662/668 (99%), Gaps = 2/668 (0%)
Strand = Plus / Plus
Query: 4 ggaattccagtcaagtgaccagtgttgaccaaagtgggccagtcttcaacttcaataagc 63
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagtcaagagaacagtgttgaccaaagtgggccagtcttcaacttcaataagc 263
Query: 64 taatcaagacagtagtccaaatccatacttctaggtcataccatagcctatcaagttgac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taatcaagacagtagtccaaatccatacttctaggtcataccatagcctatcaagttgac 323
Query: 124 aaataattgccgcagggacttactctcaaaggatagaaaattctaaacaagaggatgatt 183
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaataattgctgcagggacttactctcaaaggatagaaaattctaaacaagaggatgatt 383
Query: 184 cagtaacttcttacatacagtggtggccatgataattaccattgtttcaaaattgctaga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagtaacttcttacatacagtggtggccatgataattaccattgtttcaaaattgctaga 443
Query: 244 agtgtatatttaaatatttttacaacaaacatgcaacttatgggaggcaatggaattact 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agtgtatatttaaatatttttacaacaaacatgcaacttatgggaggcaatggaattact 503
Query: 304 tggagttatttaatgatcctacattataaaggcaaataagaaaagtctgggttaggagaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tggagttatttaatgatcctacattataaaggcaaataagaaaagtctgggttaggagaa 563
Query: 364 atagtttgggaataagagcacctgtcagacagtcatgacgacctaagttgtaatcctagc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atagtttgggaataagagcacctgtcagacagtcatgacgacctaagttgtaatcctagc 623
Query: 424 atttgtgtaacaagctgtgtgttccataatttctgcttctggcttctgcccacagactgg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atttgtgtaacaagctgtgtgttccataatttctgcttctggcttctgcccacagactgg 683
Query: 484 taatgtaaacacatgtgcatacacacacacacacaaaagtaaataaaataaaaaagaata 543
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 684 taatgtaaacacatgtgcatacacacacacaca--aaagtaaataaaataaaaaagaata 741
Query: 544 aaattcttaaagaaaataccatactgtatcatacaaatgcatttaaatactattttcaaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aaattcttaaagaaaataccatactgtatcatacaaatgcatttaaatactattttcaaa 801
Query: 604 gtgaaagtaaaattcagaaaattcatttttaacacaatggnaaatattattcttgcacac 663
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 802 gtgaaagtaaaattcagaaaattcatttttaacacaatggaaaatattattcttgcacac 861
Query: 664 gtagataa 671
||||||||
Sbjct: 862 gtagataa 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1069
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1059
Effective search space: 699999
Effective search space used: 699999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no299_d16.g1 MSMg01no299_d16.g1 CHROMAT_FILE:
MSMg01no299_d16.g1 PHD_FILE: MSMg01no299_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:06 2005
(673 letters)
>mm_chr19_50522257_50523331
Length = 1075
Score = 739 bits (382), Expect = 0.0
Identities = 386/388 (99%), Gaps = 2/388 (0%)
Strand = Plus / Minus
Query: 288 gagagagagagaagagagaataaaaagaaccactattcaaataggtggaaggaataaagg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1075 gagagagagagaagagagaataaaaagaaccactattcaaataggtggaaggaataaagg 1016
Query: 348 aaccctgtgtatcacacagggtttctcctgtggggtgcatacatatcactagacctttgc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 aaccctgtgtatcacacagggtttctcctgtggggtgcatacatatcactagacctttgc 956
Query: 408 tcacacctatacaacacacaacactgagaaatacaaatgaacactaggttttggtgataa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 tcacacctatacaacacacaacactgagaaatacaaatgaacactaggttttggtgataa 896
Query: 468 tggtgagtcaatgtaggttccccagttccaggcagatattgacagtagtaaagctgagaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 tggtgagtcaatgtaggttccccagttccaggcagatattgacagtagtaaagctgagaa 836
Query: 528 gagctactgtaaatagatgggaactctgaagttttgttaagtcttgctgaaagcctaaag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 gagctactgtaaatagatgggaactctgaagttttgttaagtcttgctgaaagcctaaag 776
Query: 588 gtgttct--aaaaaaaataattaaatctttgaataattacctttgatgttctgaaggttt 645
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 gtgttctaaaaaaaaaataattaaatctttgaataattacctttgatgttctgaaggttt 716
Query: 646 tgactctgatcaacagttggtttgttat 673
||||||||||||||||||||||||||||
Sbjct: 715 tgactctgatcaacagttggtttgttat 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1075
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1065
Effective search space: 706095
Effective search space used: 706095
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
