BAC Information

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BAC

Clone NameMSMg01-302G10
Chromosome19 (Build37)
Map Location 15,628,701 - 15,628,989
singlet/doubletsinglet
Overlap genenone
Upstream geneTle4, EG433225, EG635497, Pomc-ps1
Downstream geneLOC667482, Psat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302G10.T7 (MSMg01no302_g10.b1)MSMg01-302G10.TJ (MSMg01no302_g10.g1)
ACCAG428301AG428302
length734740
length of high quality
(start - end)
314 (44 - 357)289 (74 - 362)
definitionCHROMAT_FILE: MSMg01no302_g10.b1 PHD_FILE: MSMg01no302_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:02 2005CHROMAT_FILE: MSMg01no302_g10.g1 PHD_FILE: MSMg01no302_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCTTCTTTTAGGACCTTGAGGTATATCATTAGCTTATTTATGATCT
TCCTGTTTTTTTATTGTAAACACTCTCAGGTATATGTTTTCCTCTTAGAA
CTGCTTTGGTCACATCCCAAGTGTTTCTGTTTCCATTTTTATTTGCTAGT
AAGATAATGTGAATTCCCTCATTGACTTGATCCACTACCAGTCAATTCCA
CAATGCATTATAGCCTCATGTATAGTTTGTAGTCTTTGTAGTTTTCTTGC
TATGATTTCTAGTTTATAATTATTGATCTGACGAGATAAATTATTTTGAA
TTTTGTATTGTAANTTTTCCCCCCCCCCCCCTTGACTTATTCACTTTACA
TCCTGATTGCAGCCTCCACCTTCAAAAAAAAATCACACAGCCGCTCCCCT
CATTCCCCACCTTCTTTCTCCTCTGAGAAAGGGAAATACGCTCTGGATAT
TGTTCCATCCTAGCACATCAAGTCACTCACATGTAGGCAACACAATGGAG
ACTGTATCCAATGATGCCTTTGCTGAATATACCCCTCTTACTTTATTACT
TTATGTATGCTTTCAGGGTCTAAATTATGTCATCATGTGCTAAACTGTCT
TTTCTTTTTCTTTTTTCTTTTCTTTTTTCTTTCCCCTCCTTCCCCATATA
AGCTCATATATTTGTATGCCTGTTTCCCAGTTGT
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGATGGCTTGGTTCAGTTTGCTGCAAA
TAGTCACACTGGCCTTAATGTGTAGCACTGGCTCACACACATCAGGCTGC
TTGGTGACGACTAAACGAGGCAAACTAATAGAATTTTTTTCCAACGCACT
AAGCAAGTCTTCAGTAAAGAAAAACACATTGATTCCAAAGTTGTTTACCA
CCAACTAAACAGAGCCCCTATAGCTTTTCCCATGCAGTCCACATTAGAGC
TAAATTAACAGTCCTCATATGTATCCATTCTGCTCCTAACAGGCAAAAGT
GCTTACACCATTATAGTATGCCCNTTGCCTNACCCTAAATCATGATGCAG
AAGGGTGTCTTCCTGCCTTAACCAAATATAAAAAGCTGTGATAGCATGCT
AGACAGTGCCTTGAGGAAAAAGTAATGTAGTCAGAGCTCATAAATTATTC
GGGCGTTTTAACTCAGTGGTGAAGTACTCGCTTTCAAATAAAGGCCCATG
ATGGTTGGGCATGCAAAAATGAGAATCTGGAAGGATGACGACGTTGATAA
GCCCCGGGATTCTGTTATCACATCTGTGGCTCTGCTGTTACTAACCTCTC
TCATGAATCCATTCATGAAAGTAAATTCTTTGTAGTAAAAAACCCCGTTA
GTTCAGTTATATATAAACAAACATTGAAGGTTGGAGCGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_g10.g1 MSMg01no302_g10.g1 CHROMAT_FILE:
MSMg01no302_g10.g1 PHD_FILE: MSMg01no302_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:02 2005
         (289 letters)



>mm_chr19_15628501_15629189
          Length = 689

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatggcttggttcagtttgctgcaaatagtcacactggccttaatgtgtagcactggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatggcttggttcagtttgctgcaaatagtcacactggccttaatgtgtagcactggct 260

                                                                       
Query: 61  cacacacatcaggctgcttggtgacgactaaacgaggcaaactaatagaatttttttcca 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacacacgtcaggctgcttggtgacgactaaacgaggcaaactaatagaatttttttcca 320

                                                                       
Query: 121 acgcactaagcaagtcttcagtaaagaaaaacacattgattccaaagttgtttaccacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgcactaagcaagtcttcagtaaagaaaaacacattgattccaaagttgtttaccacca 380

                                                                       
Query: 181 actaaacagagcccctatagcttttcccatgcagtccacattagagctaaattaacagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actaaacagagcccctatagcttttcccatgcagtccacattagagctaaattaacagtc 440

                                                            
Query: 241 ctcatatgtatccattctgctcctaacaggcaaaagtgcttacaccatt 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcatatgtatccattctgctcctaacaggcaaaagtgcttacaccatt 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)