BAC Information

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BAC

Clone NameMSMg01-303C08
Chromosome19 (Build37)
Map Location 25,479,448 - 25,479,781
singlet/doubletsinglet
Overlap geneAnkrd15
Upstream genePip5k1b, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, LOC433233
Downstream geneLOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806, 1700048O14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303C08.T7 (MSMg01no303_c08.b1)MSMg01-303C08.TJ (MSMg01no303_c08.g1)
ACCAG428821AG428822
length761767
length of high quality
(start - end)
458 (69 - 526)235 (124 - 358)
definitionCHROMAT_FILE: MSMg01no303_c08.b1 PHD_FILE: MSMg01no303_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:58 2005CHROMAT_FILE: MSMg01no303_c08.g1 PHD_FILE: MSMg01no303_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAAT
TCTTTTTTTTCTCCCATGCAGATGTGATGCTAGGGTCGATAGCTGTCAAC
TTGGACTTGAGTTTACATGAGGAATGGAGGAACCTGTGGTGGAAGGAATC
TGGATCTCAAGCGGCTCTGAGGATGAAAGCTGATATTACAACTCTTGAAG
ACAGCCAGGCAGTGGTGGCACATGCTTTTAGTCCCAGCACTTGGGAGGCA
GAGGCAGGCGGATTTCTGGGTTCTAGGCCAGCCTGGTCTACAGACTGAGT
TCCACAGGGCTATACAAAGATACCCTGTCTCCAAAAACCAAAAACCAAAA
CCAACCAAACAAAAACCCATAACCACCACACATACATACACAAACACAAA
AACCACAAAAACCCACAAACAAACAAACAAAAAATAAACTCTTGAAGAGC
CTAAAGAGTGACCTTGAGTTCTAAGAGATGCAGCAGTGTCTATCCTGTGC
TATCTTCTCACCGTTACCCCCACATTGCGGGGGGGTGGGGGTGCTGTTTT
GCCATACTTCCATTCTGCTTACTTTTTCCCTTCTTTCATTTTCTTTCATT
TGCTCTTCCCAATATTTTCGTCCTTCTTACTTTTTTGTCCCCCTTTGTTT
CCACTTTTCCTTGCATTGTCACTATCACTCTTTTACTTGCCCCCATTTTC
TTTTTCTTCCCTTACCAATACTTTTACCCCCGCCCCCGGTTCTGTTGCTT
ATCCCTTTCAN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGGAGGGGTAGGCATTACAAACTATTTTT
TTTTGCATGTGTATTTTTGCCTGTTCATGTGTAGGCACACTAGTGTGTGC
AGATGAACATATATACTCATGTGAGCATGTAGAAGCCAGAACTTGAAGTC
AGATGTCTTCCTGGACGGCTTCCCACCTTATTTACTAAGGCAGCCAGTCT
TCCTGAACTTACAGCCCACTGACTGAGCAGTCTAGCTAGCCAGGTGAGGA
CATTTGAAAAACAGGAATCCTTTGTTTCCGATCCTCTCCCTGTAAGAACG
TTTCTCATTTANTTTTCTGTCCCCCCCCCCCGCCTCCCACACCATCTACT
GAATCCAAGGACCCTCTCAACCCATGAAGAAACAGAGGTTCCCAGGAGGA
GACCTTTTGCTCTGTTACCCATTGCCTTTTGCTTGTTCTAACAGTCTGGT
CTAGGGGAAGGGGTGCTGTGTGTGTGTGTGCGTGTGTGTGCGTGTGTGTG
TGTGTGCTTGTACCTTTCCTATCCTTTACCTTTTCCTATACTTCCTCCCT
CCCTTTTTTATTTTTTTTATTCTTTTCACTTCTTCCTTCGTTCCCTTTTC
TTACCCCTTTTTTTCCCCTCTCTTTTTTATTTTAATTCACCCTATCCTCT
TTTCTCCTTTTATCCTTCCTTTCCAACTTCTATACTCTTCCCCTATTTTT
TTCCCCTACTTTTACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_c08.b1 MSMg01no303_c08.b1 CHROMAT_FILE:
MSMg01no303_c08.b1 PHD_FILE: MSMg01no303_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:58 2005
         (458 letters)



>mm_chr19_25479448_25480305
          Length = 858

 Score =  623 bits (322), Expect = 0.0
 Identities = 331/334 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagatgtgatgctagggtcgatagctgtcaacttggacttgagtttacatgaggaatgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cagatgtgatgctagggtcgatagctgtcaacttggacttgagtttacatgaggaatgga 275

                                                                       
Query: 61  ggaacctgtggtggaaggaatctggatctcaagcggctctgaggatgaaagctgatatta 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 274 ggaacctgtggtggaaggaatctggatctcgagcggctctgaggatgaaagctgatatta 215

                                                                       
Query: 121 caactcttgaagacagccaggcagtggtggcacatgcttttagtcccagcacttgggagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 caactcttgaagacagccaggcagtggtggcacatgcttttagtcccagcacttgggagg 155

                                                                       
Query: 181 cagaggcaggcggatttctgggttctaggccagcctggtctacagactgagttccacagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 cagaggcaggcggatttctgggttctaggccagcctggtctacagactgagttccacagg 95

                                                                       
Query: 241 gctatacaaagataccctgtctccaaaaaccaaaaaccaaaaccaaccaaacaaaaaccc 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  gctatacaaagaaaccctgtctccaaaaaccaaaaaccaaaaccaaccaaacaaaaaccc 35

                                             
Query: 301 ataaccaccacacatacatacacaaacacaaaaa 334
           | ||||||||||||||||||||||||||||||||
Sbjct: 34  aaaaccaccacacatacatacacaaacacaaaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)