Query= MSMg01no303_h15.b1 MSMg01no303_h15.b1 CHROMAT_FILE:
MSMg01no303_h15.b1 PHD_FILE: MSMg01no303_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:24 2005
(643 letters)
>mm_chr19_48903444_48904486
Length = 1043
Score = 1151 bits (595), Expect = 0.0
Identities = 628/639 (98%)
Strand = Plus / Plus
Query: 5 gaattctcattatctcccagttctcttgccacagtgaagatcacagcacaagagaagttc 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcattatcttagagttctcttgccacagtgaagatcacagcacaagagaagttc 264
Query: 65 agcggttggtccccagccaggcctctgggaccggcagacatgctttgtggggcatataat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcggttggtccccagccaggcctctgggaccggcagacatgctttgtggggcatataat 324
Query: 125 tgtttatactgctttatggaggcataattgaggtaaaatgaattacacatatatttagag 184
||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtttgttctgttttatggaggcataattgaggtaaaatgaattacacatatatttagag 384
Query: 185 tctacagtttggtaagttttgacctatgtctaaacctatgaaaacatcatcacaattaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctacagtttggtaagttttgacctatgtctaaacctatgaaaacatcatcacaattaag 444
Query: 245 ataataaatattcttatgagattatttgggccaatttagaattcatcacccaaccccaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ataataaatattcttatgagattatttgggccaatttagaattcatcacccaaccccaat 504
Query: 305 cctaaccattaacctacttctgtcactacagacttaaatacatcttatataaatgtgtgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctaaccattaacctacttctgtcactacagacttaaatacatcttatataaatgtgtgt 564
Query: 365 acattcacccatagtattcttttattgtatgctttagaaggcaatttcttttcatttctg 424
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acatttattcatagtattcttttattgtatgctttagaaggcaatttcttttcatttctg 624
Query: 425 agtagtgttccattatactgatagactataatgtacgcatatacatgtatatacatggat 484
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agtagtgttccattatattgatagactataatgtacgcatatacatgtatatacatggat 684
Query: 485 tataaatgaattcaattaaacagacacttatggatgtagattagataccataacccatat 544
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tataaatgaattcaactaaacagacacttatggatgtagattagataccataacccatat 744
Query: 545 acatattataattttaaagtgccaataggtgttctggttttgattctcacagatatttgc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acatattataattttaaagtgccaataggtgttctggttttgattctcacagatatttgc 804
Query: 605 cataagcatcagtggattcgtctttagatgctttaaatt 643
|||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cataagcatcagtggattcgtctttagatgctttaaatt 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no303_h15.g1 MSMg01no303_h15.g1 CHROMAT_FILE:
MSMg01no303_h15.g1 PHD_FILE: MSMg01no303_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:24 2005
(546 letters)
>mm_chr19_49091489_49092435
Length = 947
Score = 1019 bits (527), Expect = 0.0
Identities = 542/547 (99%), Gaps = 1/547 (0%)
Strand = Plus / Minus
Query: 1 aaaagcaaaatcagggaaacctgtcagcctcaatgagagccagctgtaggtgggaaagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 aaaagcaaaatcagggaaacctgtcagcctcaatgagagccagctgtaggtgggaaagtg 688
Query: 61 aaacacaagtgttgtttttttactgagagtgcttttacattactcaagaacagaaggcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aaacacaagtgttgtttttttactgagagtgcttttacattactcaagaacagaaggcaa 628
Query: 121 tgacctgatgcctaagatgctaaatcagtaagaaaggcatcatcggtttacaagaaacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tgacctgatgcctaagatgctaaatcagtaagaaaggcatcatcggtttacaagaaacct 568
Query: 181 caaaagtcaagatgaaagtttaggatttctgaactgcagggatagatagctcaaagtcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 caaaagtcaagatgaaagtttaggatttctgaactgcagggatagatagctcaaagtcag 508
Query: 241 ggctctcattgcccatgttgccaagcaatggtttgggtctggactagccatttccagttt 300
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 507 ggttctcattgcccatgttgccaagcaatggtttgggtctgggctagccatttccagttt 448
Query: 301 cttgcccttttattgaaggcactgaaacaaagattcacacagcttacgaatatacaaaaa 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 447 cttgcccttttattgaaggcactgaaacaaagattcacacagcttaagaatatacaaaaa 388
Query: 361 aaa-tatttaaagcatagcatagcaaatgtttggaatctgcaaacattccagattgtgta 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aaaatatttaaagcatagcatagcaaatgtttggaatctgcaaacattccagattgtgta 328
Query: 420 tgtggcccctgagtgaaagagtgttcaagacattgactgtaatgtttggaatttaattta 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cgtggcccctgagtgaaagagtgttcaagacattgactgtaatgtttggaatttaattta 268
Query: 480 ctgtctggggcagtaacattttgaatattcagggcatgggaattgtttctccagggtttg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctgtctggggcagtaacattttgaatattcagggcatgggaattgtttctccagggtttg 208
Query: 540 tcactga 546
|||||||
Sbjct: 207 tcactga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 947
Length adjustment: 10
Effective length of query: 536
Effective length of database: 937
Effective search space: 502232
Effective search space used: 502232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
