BAC Information

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BAC

Clone NameMSMg01-307C12
Chromosome19 (Build37)
Map Location 49,648,972 - 49,687,461
singlet/doubletdoublet
Overlap genenone
Upstream geneSorcs3, LOC100042896
Downstream geneLOC629448, Siah1-ps1, EG433251, Sorcs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307C12.T7 (MSMg01no307_c12.b1)MSMg01-307C12.TJ (MSMg01no307_c12.g1)
ACCAG431608AG431609
length740740
length of high quality
(start - end)		695 (46 - 740)664 (77 - 740)
definitionCHROMAT_FILE: MSMg01no307_c12.b1 PHD_FILE: MSMg01no307_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:08 2005CHROMAT_FILE: MSMg01no307_c12.g1 PHD_FILE: MSMg01no307_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,686,820 - 49,687,461)(49,648,972 - 49,649,630)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCTCAGAAGCGTGAACTCAGAGAGATGCATTGATGACTTCTGAT
CTCAGCCCCTGACCAGATGAGGCCAATGGAAGTACATCAGAAGCGTGGGA
CTAGTAGGTCTTGCTTCAATTTGCCTCATTGATTCTAGTGAACCAGAGGA
GGATGCTTCAGGTCATGAAGGTGGCTATGCTCGTCTCTCCATTGACTTGA
CAGATTATTAAGGAGTTTCGGTTTTTATATAAATTCAGAACTTTTTTTAG
GTTTAGGGCCACATACACATGTACTTCCTATGGTGTATTTGTGGCAGTCA
GGACAGACAACTTCTGGGAACCAGTTTATCCTTTTTGCCATGTAATCAGA
ACATGTACCATGGTTAGGCAAAAACTTGTGGGACATAAATGAGACGTAAG
AAAATATAGATAAAACCATAACTGAATCTAGTAACAGGAAATCAATGCAG
AAAAATCAATACAGAAATATCAATGAAAGTAAGATCATGTTCTTTGAACA
TATCAAAACATTGAAAATTATCTACACAGGTTAAAAACAAACCAAAATGA
TAGAAAATGGAAGAACAAAAATGGATGAGATAAGTGGAAAATGATAATAT
AAATGATTGAGATAGCATCAATATTGATGTCATGTATATTAAATAATAAT
AAATTATCATTATAGACAAGTATATATCCCAGAATTGGAT

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCACCAATAAGCATGACTGAACA
AGTGTCTTTGTGGTGGTATGAAATATCTTTGGGGATTTCTTTACAATAGT
GTACTTGTTAAAGCATGAGTAGTATTTCCAGTGTAGAGAAGGATTAACTA
GTAAAAACTTATGTCAGGTACTTCTAATTATAAATCTAGCAGAGTCACAC
TTGGAATGGTTTTCAGTGATGAAACACATTGGCAATGTCCCATGTGCTTT
TTAGAGCCGCAGCATGGGGTTTAAGAATAACCTAGAAACATAACAAATAA
GTTGTGGGTTTATTTATTTGGCATGGACTGGTTGTTGGCTTGTTAGGCAG
TATATATCAGCAAATATGATAAAAGAAATTATATATTCTTCTTAAATCCA
CATAAATGCACATAAAAATTGACAAGAAGTGTTTGTTAAATAAATGAAGA
GCTGGTGAGACAGATCTATGGCAAAAGCAGTTGCATGCAAGAACGAGATC
CTGAGTTCAAACACGCAGGAGTTATATAAAGGCCATACATGCTAGCACAC
ATCAGGAACCCATTTGCTCCAATGGTGGGGTGGTAAGTAGAAATCGGAAA
TTCTCTAGAATCTTTCTGGCCAACAAGATTGAAGTTTGCAGAAGCACACT
CTCCACATGCCATAGCACATCTCCTCTCACACTCAGATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_c12.b1 MSMg01no307_c12.b1 CHROMAT_FILE:
MSMg01no307_c12.b1 PHD_FILE: MSMg01no307_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:08 2005
         (695 letters)



>mm_chr19_49686820_49687914
          Length = 1095

 Score = 1226 bits (634), Expect = 0.0
 Identities = 640/642 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacctcagaagcgtgaactcagagagatgcattgatgacttctgatctcagcccc 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gaattcacctcagaagtgtgaactcagagagatgcattgatgacttctgatctcagcccc 583

                                                                       
Query: 65  tgaccagatgaggccaatggaagtacatcagaagcgtgggactagtaggtcttgcttcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tgaccagatgaggccaatggaagtacatcagaagcgtgggactagtaggtcttgcttcaa 523

                                                                       
Query: 125 tttgcctcattgattctagtgaaccagaggaggatgcttcaggtcatgaaggtggctatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tttgcctcattgattctagtgaaccagaggaggatgcttcaggtcatgaaggtggctatg 463

                                                                       
Query: 185 ctcgtctctccattgacttgacagattattaaggagtttcggtttttatataaattcaga 244
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ctcgtctctccattgactttacagattattaaggagtttcggtttttatataaattcaga 403

                                                                       
Query: 245 actttttttaggtttagggccacatacacatgtacttcctatggtgtatttgtggcagtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 actttttttaggtttagggccacatacacatgtacttcctatggtgtatttgtggcagtc 343

                                                                       
Query: 305 aggacagacaacttctgggaaccagtttatcctttttgccatgtaatcagaacatgtacc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aggacagacaacttctgggaaccagtttatcctttttgccatgtaatcagaacatgtacc 283

                                                                       
Query: 365 atggttaggcaaaaacttgtgggacataaatgagacgtaagaaaatatagataaaaccat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 atggttaggcaaaaacttgtgggacataaatgagacgtaagaaaatatagataaaaccat 223

                                                                       
Query: 425 aactgaatctagtaacaggaaatcaatgcagaaaaatcaatacagaaatatcaatgaaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 aactgaatctagtaacaggaaatcaatgcagaaaaatcaatacagaaatatcaatgaaag 163

                                                                       
Query: 485 taagatcatgttctttgaacatatcaaaacattgaaaattatctacacaggttaaaaaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 taagatcatgttctttgaacatatcaaaacattgaaaattatctacacaggttaaaaaca 103

                                                                       
Query: 545 aaccaaaatgatagaaaatggaagaacaaaaatggatgagataagtggaaaatgataata 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 aaccaaaatgatagaaaatggaagaacaaaaatggatgagataagtggaaaatgataata 43

                                                     
Query: 605 taaatgattgagatagcatcaatattgatgtcatgtatatta 646
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  taaatgattgagatagcatcaatattgatgtcatgtatatta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space:   743225
Effective search space used:   743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no307_c12.g1 MSMg01no307_c12.g1 CHROMAT_FILE:
MSMg01no307_c12.g1 PHD_FILE: MSMg01no307_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:08 2005
         (664 letters)



>mm_chr19_49648772_49649835
          Length = 1064

 Score = 1243 bits (643), Expect = 0.0
 Identities = 655/659 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcaccaataagcatgactgaacaagtgtctttgtggtggtatgaaatatctttggggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcaccaataagcatgactgaacaagtgtctttgtggtggtatgaaatatctttggggat 260

                                                                       
Query: 61  ttctttacaatagtgtacttgttaaagcatgagtagtatttccagtgtagagaaggatta 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 ttctttacaatagtgtacttgttaaagcatgaatagtatttccagtgtagagaaggatta 320

                                                                       
Query: 121 actagtaaaaacttatgtcaggtacttctaattataaatctagcagagtcacacttggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actagtaaaaacttatgtcaggtacttctaattataaatctagcagagtcacacttggaa 380

                                                                       
Query: 181 tggttttcagtgatgaaacacattggcaatgtcccatgtgctttttagagccgcagcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 tggttttcagtgatgaaacacattggcaatgtcccatgtgcttttaagagccgcagcatg 440

                                                                       
Query: 241 gggtttaagaataacctagaaacataacaaataagttgtgggtttatttatttggcatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggtttaagaataacctagaaacataacaaataagttgtgggtttatttatttggcatgg 500

                                                                       
Query: 301 actggttgttggcttgttaggcagtatatatcagcaaatatgataaaagaaattatatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actggttgttggcttgttaggcagtatatatcagcaaatatgataaaagaaattatatat 560

                                                                       
Query: 361 tcttcttaaatccacataaatgcacataaaaattgacaagaagtgtttgttaaataaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttcttaaatccacataaatgcacataaaaattgacaagaagtgtttgttaaataaatg 620

                                                                       
Query: 421 aagagctggtgagacagatctatggcaaaagcagttgcatgcaagaacgagatcctgagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagagctggtgagacagatctatggcaaaagcagttgcatgcaagaacgagatcctgagt 680

                                                                       
Query: 481 tcaaacacgcaggagttatataaaggccatacatgctagcacacatcaggaacccatttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcaaacacgcaggagttatataaaggccatacatgctagcacacatcaggaacccatttg 740

                                                                       
Query: 541 ctccaatggtggggtggtaagtagaaatcggaaattctctagaatctttctggccaacaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctccaatggtggggtggtaagtagaaatcggaaattctctagaatctttctggccaacaa 800

                                                                      
Query: 601 gattgaagtttgcagaagcacactctccacatgccatagcacatctcctctcacactca 659
           |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 801 gattgaagtttgcagaagcacactctccacatgccataacacatgtcctctcacactca 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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