TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTAGTCTCCCCGGAGTGGAACTCTTCAAAAGGATTAGAAGGAATAGG
AGGTGTGGCCTTGTTGGAGGAAGTATGTTGCCTGTGGTGGGCTTTGAGGT
TTCAAAAACCCATGCTAGGCCCAGACTTGCTTTCCCCTCTGCCTATGGAT
GAAGATGTAGCTCCCAGCTAACATTCTATCACCTGCCAGCATGCAGCCAT
GCCCCCTGCCATGGGGATAAGGGATAAACCCCGGAAACTGTAAGCAAGAC
CCCATTAATTAAATACTTTATCTTATCATGATGTCTCTTCACACAGTGGA
GCACTGACCAGAGACACGGCCTATGTTTAGTGTAGAACCCCGGGCTGTTT
CCGTTTTCTTTCACACCCCCNCAATCTTTTCTTGACTATGCTTGACCCTC
GGTGGAGATCATTTTACAGTGCATTTTGGAGTCTCCCTCCATTTGGATCT
ATCCAATGTCTCTTCCTGATCAATACCAGCTATTTATTGTCATTATCAAT
GGCAATATCTGCTTTGCAATCAGTCTTAGGCCTTGTTCTTCTCACTGCAT
CCTCTCTCAGATTTGAGAGTCCTTTCTACAGGCCTCCGGNGTCTGTGGGC
GTGGCCTTGTGGTGAGTGTCCTTTCTACAGGCCTCCGGTGTCTGTGGGCG
TGGCCTTGTAAGT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATAAAAAGGGCTGGAGTGGAGTGGGGAC
AGCTGCCAGAAATAAACAGGCTGGCTCTTTTTCTTTTTTCAAAAAAAAAA
AAACCCTCACTATTTGCCAAGTGTGCAGAGCTCAATGTCTGATTGCCGTC
CACGGGGAATTTTTAAATCAGGGGGAAAATAATGCAGGTAGGAAAAGGTG
CTGAGTCAGGGAATCTCAGCCGCGGCTCTGGGACTAAGAGGCGGTCATTA
CTGAGGCAATGTGGACGGTATGTGTCGGGATCAGAATATCATTTGAGAGG
CCCTGGGGAACCCAAGAGAGAAAGATGGTTCTTAGTCCTTCCATCTGCAC
AAGCTCCCACCCGCCCCCCCCCACTACACTGTCAGAGATGGAAGCTGCTT
AGCAGCCTCTCTAGGTGAGGGCTTTGCCTACCCAGGTGAACAGCGTGAGG
TAAAGATGCACGCTCCTTAGTGCTACAGTGACTTGCTATGGCCTGTTGCT
TGTTCCACCCAAGTGGGAGGCGTTTACAGTTCCTGGAAGCCCTCAGCTGG
AATCATACTGGTATCAAAAGAGCCACCCTGTACCAGACTATGCTGGGCAG
GTGAATGACAAACAGTGCGATATGCTTACCCAATACCTGAGCATTTTGAG
AACTCAATATCTGTCATTCATTCTTTCATTC

Query= MSMg01no307_k15.g1 MSMg01no307_k15.g1 CHROMAT_FILE:
MSMg01no307_k15.g1 PHD_FILE: MSMg01no307_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:47 2005
         (564 letters)



>mm_chr19_58235608_58236571
          Length = 964

 Score =  953 bits (493), Expect = 0.0
 Identities = 543/569 (95%), Gaps = 17/569 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaaaagggctggagtggagtggggacagctgccagaaataaacaggctggctcttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 ataaaaagggctggagtggagtggggacagctgccagaaataaacaggctggctcttttt 774

                                                                       
Query: 61  cttttttc---------aaaaaaaaaaaaaccctcactatttgccaagtgtgcagagctc 111
           ||||||||         |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 cttttttcaaaaaaaaaaaaaaaaaaaaaaccctcactatttgccaagtgtgcagagctc 714

                                                                       
Query: 112 aatgtctgattgccgtccacggggaatttttaaatcagggggaaaataatgcaggtagga 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 aatgtctgattgccgtccacggggaatttttaaatcagggggaaaataatgcaggtagga 654

                                                                       
Query: 172 aaaggtgctgagtcagggaatctcagccgcggctctgggactaagaggcggtcattactg 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aaaggtgctgagtcagggaatctcagccgcggctctgggactaagaggcggtcattactg 594

                                                                       
Query: 232 aggcaatgtggacggtatgtgtcgggatcagaatatcatttgagaggccctggggaaccc 291
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aggcaatgtggacgggaggtgtcgggatcagaatatcatttgagaggccctggggaaccc 534

                                                                       
Query: 292 aagagagaaagatggttcttagtccttccatctgcacaagctcccacccgccccccccc- 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
Sbjct: 533 aagagagaaagatggttcttagtccttccatctgcacaagctcccacccgctccc----t 478

                                                                       
Query: 351 ---actacactgtcagagatggaagctgcttagcagcctctctaggtgagggctttgcct 407
              ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 477 ggtactacactgtcggagatggaagctgcttagcagcctctctaggcgagggctttgcct 418

                                                                       
Query: 408 acccaggtgaacagcgtgaggtaaagatgcacgctccttagtgctacagtgacttgctat 467
           ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 417 acccaggtgaacatcgtgaggtaaagatgcacgctccttagtgctacagcgacttgctat 358

                                                                       
Query: 468 ggcctgttgcttgttccacccaagtgggaggcgtttacagttcctggaagccctcagctg 527
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 357 ggcctgttgcttgttccacccaagtgggaggtgtttacagttcctggaagccctcagctg 298

                                        
Query: 528 gaatcatactggtatcaaaagagccaccc 556
           |||||||||||| ||||||||||||||||
Sbjct: 297 gaatcatactggcatcaaaagagccaccc 269


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)