Query= MSMg01no307_p02.b1 MSMg01no307_p02.b1 CHROMAT_FILE:
MSMg01no307_p02.b1 PHD_FILE: MSMg01no307_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:07 2005
(685 letters)
>mm_chr19_60910433_60911519
Length = 1087
Score = 1286 bits (665), Expect = 0.0
Identities = 677/681 (99%), Gaps = 2/681 (0%)
Strand = Plus / Minus
Query: 6 ggaattcaagtttttctctagaag-ataaaaagcaaactttgaggcagctttctgaaaat 64
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 837 ggaattcaagtttttttctagaagaataaaaagcaaactttgaggcagctttctgaaaat 778
Query: 65 aaaccattaagtttatggctacagtaagactaaataggaatgaacaatgaaggctagcat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 aaaccattaagtttatggctacagtaagactaaataggaatgaacaatgaaggctagcat 718
Query: 125 gtgcgatctgtgtggctcctaccattaggacagtaattaaaattaaaacactgtccagca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gtgcgatctgtgtggctcctaccattaggacagtaattaaaattaaaacactgtccagca 658
Query: 185 ctggatcaaattggcagggagaaaaatcacaattgtttttatgtgctctcacctaagatc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ctggatcaaattggcagggagaaaaatcacaattgtttttatgtgctctcacctaagatc 598
Query: 245 tcactatttggaaataagtcattaaaaatagaacattcctataattccaatagtgtataa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tcactatttggaaataagtcattaaaaatagaacattcctataattccaatagtgtataa 538
Query: 305 tgtcaatgggtactaggaataaaagggaagttctgtaggggtcgcagcaagatgttgaga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tgtcaatgggtactaggaataaaagggaagttctgtaggggtcgcagcaagatgttgaga 478
Query: 365 acagtcacaccttcagcatttgttcagctgctgctagatgatac-ggaagttttctgttg 423
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 477 acagtcagaccttcagcatttgttcagctgctgctagatgatacaggaagttttctgttg 418
Query: 424 cgggtggaaatcgctgctgcttcagtgcctcaacattgaggatgacttttcccccatcat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 cgggtggaaatcgctgctgcttcagtgcctcaacattgaggatgacttttcccccatcat 358
Query: 484 cagacacttctgagaatggtgccaggtgagtgaagatttcttttgtttttagggcaatgt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cagacacttctgagaatggtgccaggtgagtgaagatttcttttgtttttagggcaatgt 298
Query: 544 cctttaatagaacaggtaaatacacagtatgttagtatctaagaatatgaatagttattt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 cctttaatagaacaggtaaatacacagtatgttagtatctaagaatatgaatagttattt 238
Query: 604 cctagggttctcctattagactaacttcatgggtttttttgtttgtttgtttgtttgttt 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 cctagggttctcctattagactaacttcatgggtttttttgtttgtttgtttgtttgttt 178
Query: 664 ggggttttttgtttgttttcc 684
|||||||||||||||||||||
Sbjct: 177 ggggttttttgtttgttttcc 157
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1087
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1077
Effective search space: 726975
Effective search space used: 726975
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_p02.g1 MSMg01no307_p02.g1 CHROMAT_FILE:
MSMg01no307_p02.g1 PHD_FILE: MSMg01no307_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:07 2005
(660 letters)
>mm_chr19_60756980_60758039
Length = 1060
Score = 1230 bits (636), Expect = 0.0
Identities = 654/660 (99%)
Strand = Plus / Plus
Query: 1 aatcacatggctacagtgactataagagagactgaagaaacagagctcatcccaagcaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatcacatggctacagtgactataagagagactgaagaaacagagctcatcccaagcaac 260
Query: 61 ttagtccctctttaaaatttggatgtatagaaacagcaaaggtttgataaagagggacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagtccctctttaaaatttggatgtatagaaacagcaaaggtttgataaagagggacaa 320
Query: 121 ttgaaactgtttgttgttgtcttctttctgaaggagttgggctcaagaaagactttaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaaactgtttgttgttgtcttctttctgaaggagttgggctcaagaaagactttaaat 380
Query: 181 acttattatccaatagctcttctatattccccttaccagtgctacttcctatatagcatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttattatccaatagctcttctatattccccttaccagtgctacttcctatatagcatt 440
Query: 241 cagggttggcttttccctactgcaatgagggaaggtttgtatttcagcagtagctataac 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 cagggttggcttttccctactgcaatgagggaaggtttgtatttcagcagtggctataac 500
Query: 301 cttgagaatctgccaagaacatataaatagaaagaggcatccccaaaggaaggtagcagg 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 cttgagaatctgccaagaacatataaatagaaagaggcatcaggaaaggaaggtagcagg 560
Query: 361 gctaggagagaaaatgaaacagctctcatagtgaaagtgaaaacagaaacctacacagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctaggagagaaaatgaaacagctctcatagtgaaagtgaaaacagaaacctacacagaa 620
Query: 421 cactcagatgtgtggcacctgccaacctctagttggaagaaaccacagcccttgtgttca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cactcagatgtgtggcacctgccaacctctagttggaagaaaccacagcccttgtgttca 680
Query: 481 gagatccacttggcttctctttgagtgtgtgcaagacttccttgggtctagcctgccata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagatccacttggcttctctttgagtgtgtgcaagacttccttgggtctagcctgccata 740
Query: 541 acagatgcaacaaccagtgttcgtttaaaaccctgggtccctgtaaagatggcactagag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acagatgcaacaaccagtgttcgtttaaaaccctgggtccctgtaaagatggcactagag 800
Query: 601 atgtctgtgcttcctctcattagataatttcacatcagccctgcttcccaggctataatc 660
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 801 atgtctgagcttcctctcattagataatttcacatcagtcctgcttcccaggctataatc 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
