Query= MSMg01no307_p16.b1 MSMg01no307_p16.b1 CHROMAT_FILE:
MSMg01no307_p16.b1 PHD_FILE: MSMg01no307_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:10 2005
(701 letters)
>mm_chr19_13437356_13438452
Length = 1097
Score = 1257 bits (650), Expect = 0.0
Identities = 685/700 (97%), Gaps = 8/700 (1%)
Strand = Plus / Minus
Query: 4 gaattcaagtcctttcaccagatatctgacattaatctctcaacatcacacttccatctg 63
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 gaattcaagtccttgcaacagatatctgacattaatctctcaacatcacacttccatctg 838
Query: 64 aaatgcaaagattataaatgagacttacttttagttagcactgatagaataaattagtat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 aaatgcaaagattataaatgagacttacttttagttagcactgatagaataaattagtat 778
Query: 124 ataatagaaaattgacatttgggtgtttactacaggtgactaagactgttatgtcgctag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 ataatagaaaattgacatttgggtgtttactacaggtgactaagactgttatgtcgctag 718
Query: 184 accaggaccccattttgaacaaggtcaatactagcaatgcagaggcccattcaccatgtt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 accaggaccccattttgaacaaggtcaatactagcaatgcagaggcccattcaccatgtt 658
Query: 244 gatatttctatgctcattttttcttatcttagaacctggtgtcagtgactgcatactcca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gatatttctatgctcattttttcttatcttagaacctggtgtcagtgactgcatactcca 598
Query: 304 gaatttatgtttccttactacaagcatataacttctgaaatttatctgagcagcttattt 363
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 597 gaatttatgtttccttactacaa-catataacttctgaaatttatctgagcaacttattt 539
Query: 364 tgaaattttatctttcaggaatttctcatttcatttggacaaagagttcagtatctttaa 423
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 538 tgaaattttatctttcaggaaattctcatttcatttggacaaagagttcagtatccttaa 479
Query: 424 tcctccatctttcctttgctattgtcatatcacagtcaaatatcatag--attctgaaac 481
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 478 tcctccatctttcctttgctattgtcatatcacagtcaaatatcatagaaa-----aaac 424
Query: 482 ttgaaaaagacccacattattggcagaatgtagtagttataccaatagtgctgacacatt 541
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 423 ttgaaaaagacccacattattggcagaatgtagtagttataccagtagtgctgacacatt 364
Query: 542 ctaccttctcaaaaattgatttgaaaatttctaatgtagtaaccaaatttaatatttcct 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ctaccttctcaaaaattgatttgaaaatttctaatgtagtaaccaaatttaatatttcct 304
Query: 602 tatttgaatttcaactattcaatgtttcaaaattatagaagcagtataacatacattcat 661
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 303 tatttgaatttcaactattcaatgttttaaaattatagaagcagtataacatacattcat 244
Query: 662 gataattagctagtctgggtttcagcatttctctttctct 701
||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gataattagctagtctgggtttcagcatttctctttctct 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1097
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1087
Effective search space: 751117
Effective search space used: 751117
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_p16.g1 MSMg01no307_p16.g1 CHROMAT_FILE:
MSMg01no307_p16.g1 PHD_FILE: MSMg01no307_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:10 2005
(676 letters)
>mm_chr19_13280696_13281771
Length = 1076
Score = 1282 bits (663), Expect = 0.0
Identities = 672/675 (99%)
Strand = Plus / Plus
Query: 1 aatgctttgcaagcaaccagattctgggaacatgggaattctggaataggttagcatgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgctttgcaagcaaccagattctgggaacatgggaattctggaataggttagcatgat 260
Query: 61 attcatacacaaattggcctaaaaataggctcatagagaaatacagaagagaatttaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcatacacaaattggcctaaaaataggctcatagagaaatacagaagagaatttaatt 320
Query: 121 aacgataggtacataggaaagaatattaatccaagttatataaaaagaaagaggttatga 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacgataagtacataggaaagaatattaatccaagttatataaaaagaaagaggttatga 380
Query: 181 atagttccacagaaacttatttccttagaagggaagaattaaagaacttcaaggctttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagttccacagaaacttatttccttagaagggaagaattaaagaacttcaaggctttaa 440
Query: 241 tctcaaatataggaacaaaggcccagagttatggagaaaccctatctcaacagataaaaa 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 tctcaaatataggaacaaaggcccagagttatggagaaaccctaactcaacagataaaaa 500
Query: 301 taaagagatattaatatccacagaaagtggaataaaggaaaatgacattgttttatggat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaagagatattaatatccacagaaagtggaataaaggaaaatgacattgttttatggat 560
Query: 361 ataagggagaaattgtggtagtttctttaaatgtttctaaataataaatgttttaaatgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataagggagaaattgtggtagtttctttaaatgtttctaaataataaatgttttaaatgg 620
Query: 421 tgttaaacagctgctaatttccatagaagggaggaataaagggaaactacattgtgttta 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 tgttaaacagctgctaatttccatagaagggaggaataaagggaaattacattgtgttta 680
Query: 481 ggatagaaaggagaaatagtggtaattgttaagttatataaagagaaaatagatagaatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggatagaaaggagaaatagtggtaattgttaagttatataaagagaaaatagatagaatt 740
Query: 541 atatatacacagatattaatctccttaaaagggaagaattaaagaaattaaagagatcaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atatatacacagatattaatctccttaaaagggaagaattaaagaaattaaagagatcaa 800
Query: 601 gggaaggcccttgatcgcaaatgtaggaacaaaggcaaggagataggggagaaacccttt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gggaaggcccttgatcgcaaatgtaggaacaaaggcaaggagataggggagaaacccttt 860
Query: 661 ctcaatatataaaat 675
|||||||||||||||
Sbjct: 861 ctcaatatataaaat 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
