Query= MSMg01no308_b23.b1 MSMg01no308_b23.b1 CHROMAT_FILE:
MSMg01no308_b23.b1 PHD_FILE: MSMg01no308_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:22 2005
(292 letters)
>mm_chr19_57150940_57151633
Length = 694
Score = 542 bits (280), Expect = e-158
Identities = 290/294 (98%), Gaps = 2/294 (0%)
Strand = Plus / Plus
Query: 1 ttggctggcttccccttctcttcctcccccctcactgtgggcactgttgcccttagctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ttggctggcttccccttctcttcctcccccctcactgtgggcactgttgccgttagctcc 260
Query: 61 cagcttccaggtgcccttccagatgcccagctctccccaccttcacatttcaatcttatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcttccaggtgcccttccagatgcccagctctccccaccttcacatttcaatcttatc 320
Query: 121 tgtcctcaaatttacaggctgcttctatcctagaactgcccctagggaactccttatctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcctcaaatttacaggctgcttctatcctagaactgcccctagggaactccttatctg 380
Query: 181 acatccccaagaccgtgatccacacgatccacctctgcatcgaattccgagtctatttca 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 acatccccaagaccgtgatccacacgacccacctctgcatcgaattccgagtctatttca 440
Query: 241 ccgtgtgtcctttctgttttcttttcttttttcttttttttt--aaaaagggca 292
|||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 ccgtgtgtcctttctgttttcttttcttttttctttttttttttaaaaagggca 494
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 694
Length adjustment: 9
Effective length of query: 283
Effective length of database: 685
Effective search space: 193855
Effective search space used: 193855
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no308_b23.g1 MSMg01no308_b23.g1 CHROMAT_FILE:
MSMg01no308_b23.g1 PHD_FILE: MSMg01no308_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:22 2005
(292 letters)
>mm_chr19_57314143_57314828
Length = 686
Score = 466 bits (241), Expect = e-136
Identities = 275/289 (95%), Gaps = 6/289 (2%)
Strand = Plus / Minus
Query: 1 agtaccttttctcccaatccaactccatctctctcctaggccatccatgtacctgatgct 60
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 483 agtaccttttctcccaatccaactc---ctctctcctaggccatccatgtatctgatgct 427
Query: 61 gatgctgagggcatttgccttaagtgtcctttcccatgttgagtctccatgacttatcca 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 426 gatgctgagggcatttgccttaagtgtcctttcccatgttgagtctccataacttatcca 367
Query: 121 atatgcaaaacacccaggtgttcagaagtaactggattatcaaagtcagtctcaggctaa 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 366 atatgcaaaacacccaggtgttcagaagtagctggattatcaaagtcagtctcaggctaa 307
Query: 181 gggcgtggcagggtggtggggggggtgggaatgcctttccacataaagtcattgctttcg 240
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 306 gggtgtggcagggtggtggggg---tgggaatgcctttccacataaagtcattgctttcg 250
Query: 241 ccagcatgcacttgttataaaatggttcaaagcctatcccatcccagtg 289
||||||||||| || | |||||||||||||||||||||||||||||||
Sbjct: 249 ccagcatgcacctgagagaaaatggttcaaagcctatcccatcccagtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 686
Length adjustment: 9
Effective length of query: 283
Effective length of database: 677
Effective search space: 191591
Effective search space used: 191591
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
