BAC Information

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BAC

Clone NameMSMg01-309K08
Chromosome19 (Build37)
Map Location 23,119,213 - 23,119,492
singlet/doubletsinglet
Overlap genenone
Upstream geneTrpm3, EG433230
Downstream geneKlf9, Smc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1, Gm967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309K08.T7 (MSMg01no309_k08.b1)MSMg01-309K08.TJ (MSMg01no309_k08.g1)
ACCAG433371AG433372
length738730
length of high quality
(start - end)
310 (23 - 332)280 (77 - 356)
definitionCHROMAT_FILE: MSMg01no309_k08.b1 PHD_FILE: MSMg01no309_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:17 2005CHROMAT_FILE: MSMg01no309_k08.g1 PHD_FILE: MSMg01no309_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTCCATCTGTTGATCTG
AAGTCTGGCTAATTTTTTTCCAGGGACCTACAGTGTATCATTAGGTTATT
TACTTGAGATCTTTTTGTTTTCTGAATAGAAACATTTACAGTCCTGAATT
TCCCTTTTATGGCTGCTTTCATTGTATCCCACAGGTTTCATTGTATCTCA
CAGGTTTTGAGATGCTCTGTTTTTATTCTCATTCAATTCTAGAATTTCTT
TTATGTCCTTCCTGATTATTCAAGGACCCATTCATCCCTCAGTAGTGTTC
TTTAATCTCTATGAGTTTGTATGTGATTGGGGCGGTGTTTTTTTTTTGCC
CCCCCCCCCCCCTTTATAAATTTTTTAAACCATTTATTTTTTCCCCCCCC
CTTTATAAAAAACAATTTTATCCCGTGTGCGTCTTTTCTTCTAACAATAC
TCCCTATACTCCTAACTCCCTTCCCTTTTTTCTTATTTATCACATAATTA
TATATCAACTCCATTATATTCTCTATTCTATATTTTTTTACTTTTTTCCC
CCCCTCCTTTCCTTATTTTTCACAATCACATCATTTTCTTATTTTACCCT
CTCCCTCCCTCCTTCTTTTTACCTCTTTCCCATTCCCCCTATGTCACCCC
TTTTATATTACACTTATCTGTCCCCCCTTTCTCCCCCCTTTTACATAACC
TTCCCCACACCCTATACAAGTATCCCTATTCCCCCCTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAGGTCCTCCCCCTCATCATTGC
ACAAGACATCTTATAATGGCCTCTCACATGTGGGGGACAGACTCCCGAGA
ACAAAACAACAAAGCAAATCAAAAGGTTGCAATAGTGATTTCTTCAGATT
TATGAAGCCATAGTATCTTGGCATCCGGAAGTAAATTGAGACAAACAAGG
GAACCACGGCGACGTCGGTGCGGCACGAGTACCCACCAAAGTGGGTACAT
CTGTGTCCCATCAGCTCATCCCCCGAGTGAAGCAAAATTGGAATGGGCAC
CGCCCACTTCTGTTTCTGGTTTTTCATTGGGCTCCCCTGCCCTCGTGTTT
TGAAGGGGTTTTGGAAAGTTAATTCTTAACCCCCCCCCCCCCTACGTAAA
AAAGAAAAGTTTTGTCGGATCTTTATAGATTTTTGGTGCCCCCTCAAATG
TGTGGGCGTTTTTCCCAAATATAACTACTCCAGTTCTCCTTTCTCATGTT
AACTCTACTTGTTTCTCTATCCACGCAATCAATCTATCTCCTAACTTTCT
CTTGTCAGTGTATCCTCTGGTTATCTTCTTATGACTCTCCCTTCTTTTGT
ATCTTTTTATTTTTTTTTCTCTCCGCATTCGTCCTTATTTCTCCCGCTTG
CCATGTTATGCTCCTTTAATCAGGATCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_k08.g1 MSMg01no309_k08.g1 CHROMAT_FILE:
MSMg01no309_k08.g1 PHD_FILE: MSMg01no309_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:17 2005
         (280 letters)



>mm_chr19_23119013_23119692
          Length = 680

 Score =  534 bits (276), Expect = e-156
 Identities = 279/280 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaggtcctccccctcatcattgcacaagacatcttataatggcctctcacatgtggggg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 480 ttaggtcctccccctcatcattgcacaagacatcttataatggcctctcagatgtggggg 421

                                                                       
Query: 61  acagactcccgagaacaaaacaacaaagcaaatcaaaaggttgcaatagtgatttcttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 acagactcccgagaacaaaacaacaaagcaaatcaaaaggttgcaatagtgatttcttca 361

                                                                       
Query: 121 gatttatgaagccatagtatcttggcatccggaagtaaattgagacaaacaagggaacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gatttatgaagccatagtatcttggcatccggaagtaaattgagacaaacaagggaacca 301

                                                                       
Query: 181 cggcgacgtcggtgcggcacgagtacccaccaaagtgggtacatctgtgtcccatcagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 cggcgacgtcggtgcggcacgagtacccaccaaagtgggtacatctgtgtcccatcagct 241

                                                   
Query: 241 catcccccgagtgaagcaaaattggaatgggcaccgccca 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 catcccccgagtgaagcaaaattggaatgggcaccgccca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)