BAC Information

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BAC

Clone NameMSMg01-311N23
Chromosome19 (Build37)
Map Location 10,377,601 - 10,377,875
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla
Downstream geneSyt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311N23.T7 (MSMg01no311_n23.b1)MSMg01-311N23.TJ (MSMg01no311_n23.g1)
ACCAG434247AG434248
length789824
length of high quality
(start - end)
279 (47 - 325)48 (74 - 121)
definitionCHROMAT_FILE: MSMg01no311_n23.b1 PHD_FILE: MSMg01no311_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:50 2005CHROMAT_FILE: MSMg01no311_n23.g1 PHD_FILE: MSMg01no311_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGTCTTTGGCTGTGTGACCTTGAGCTGGTGTTGTTACCTTTAA
GAGTCACTTCACACAGTGATCCCAGTGGTCCCAGAATGAAGGAGACTGTG
CGTGGAGAATTCTATAAGCAGCAAGAGGCTATACGAAGGTCAGGGATTTC
CATCAGGGCAAGAGACACAAGGTGGTTGGGAATAGAGGCATGGAATGTGA
CTGGGGAGGAAGGGAGACATAGGTTGAGGGTTTGTCATGGGAAATTAGAA
ACCCAGAGGATATATGCTCCTGGTGGTGTTATGTGGGATCTGTTGACACT
GTGAGACAGCAAATTTTTAGTAGTTTTCCCCCGCCCCCCCCGAGGAATGG
ATTTAGTTGTGGAGTTGTGNGACCCCCCCCTGTTAAAAAAAAAAAAAACT
GGGGGGGGGGGGGGGGGATATCCCTTGCTTGTCGTGTACTGTCCATTATA
TCTTCTCTTCTCTCTCCTACGTCATATCTCCTGTGCTTCTTATCATCCTT
TCATTTCCCCTTCTTCTTCCTTTTCTCCCCCTTCTTGTCCTTCCTTACGC
TTTACCGCTCTCCCTCCCCTCTTTCCTACCCTATTGCCCATTTCCCCATC
TCTTTTTCCAATTCTTCACCTGCCGTTACGCCTTCACACTCCCATTCCAC
CCATTCTCTTCTTCTTTTCCTTGTTATCTCTTCTCCCTCTTTTTACTATC
CCCATCCTCTCTGCTTTCCCCCCCTTTCACGTTTTCCTT
TGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGTGTCTCCTAGAACAATGGGCTCAG
TCTACTTCTCTGGAGTTGTTATGCCCTGGACTTTAGAAACATTGGNAAGA
GAGTGACAATGGAATTTAACATTTGTACAGAACTTTACGTTTATACCCCT
TTCACAGGCATTATCTCATCNTCTTCTCTGCAACTTTANNAAGGAAACAA
ATATCTATGTATACTATTCTCNNNNCCCCACAATTAAAATAAATGTNTAA
AAATTATTTTTCAACAGATCACCTGTTTTTTTTTGTTACTAATATCAAAT
GAAATCACAGGCCAAATTTTTTTTTTTCNTTTCTCAAAAACAAANCCCCC
CNAAAAANAAAAAAAANNNNGGGGGGGGGGCCCCGGGGGGGGGGGGGGAA
ACTTTAAAANNNNAAAAAAGGGCCCNCGCNCNGGGGGGGCCCCCNNNNNC
NCTATTATTTTTTTTNNTNTTAATTTATACTTTAACCACCATATCTTTTT
TTAAAAAATTATTAACTCTCACTTAATTAATTATACTCTCCACAATCTTC
CTACCCTCCCTTTTTACTCAAATAATCTTCCTTATAATTACCTTTTCCCA
CTACCCCTATAACTATATCATTTCACTCTTCCCCATTATTCTCAACCTTA
ACTCTTCTTCCTTTTTTATCACTTACACATTCCTCCCATTCTATTACTAA
ATACCTCCAAATTATTCTCATTCCATATTTCTCCCTCATTAAAAATATAT
GATGTGGGAGGGTGGGGGGGGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_n23.b1 MSMg01no311_n23.b1 CHROMAT_FILE:
MSMg01no311_n23.b1 PHD_FILE: MSMg01no311_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:50 2005
         (279 letters)



>mm_chr19_10377397_10378075
          Length = 679

 Score =  532 bits (275), Expect = e-155
 Identities = 275/275 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagtctttggctgtgtgaccttgagctggtgttgttacctttaagagtcacttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gaattccagtctttggctgtgtgaccttgagctggtgttgttacctttaagagtcacttc 420

                                                                       
Query: 65  acacagtgatcccagtggtcccagaatgaaggagactgtgcgtggagaattctataagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 acacagtgatcccagtggtcccagaatgaaggagactgtgcgtggagaattctataagca 360

                                                                       
Query: 125 gcaagaggctatacgaaggtcagggatttccatcagggcaagagacacaaggtggttggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gcaagaggctatacgaaggtcagggatttccatcagggcaagagacacaaggtggttggg 300

                                                                       
Query: 185 aatagaggcatggaatgtgactggggaggaagggagacataggttgagggtttgtcatgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aatagaggcatggaatgtgactggggaggaagggagacataggttgagggtttgtcatgg 240

                                              
Query: 245 gaaattagaaacccagaggatatatgctcctggtg 279
           |||||||||||||||||||||||||||||||||||
Sbjct: 239 gaaattagaaacccagaggatatatgctcctggtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)