BAC Information

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BAC

Clone NameMSMg01-312K24
Chromosome19 (Build37)
Map Location 20,698,281 - 20,853,500
singlet/doubletdoublet
Overlap geneAldh1a1, Aldh1a7
Upstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549
Downstream geneTmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312K24.T7 (MSMg01no312_k24.b1)MSMg01-312K24.TJ (MSMg01no312_k24.g1)
ACCAG434835AG434836
length802756
length of high quality
(start - end)
103 (74 - 176)291 (71 - 361)
definitionCHROMAT_FILE: MSMg01no312_k24.b1 PHD_FILE: MSMg01no312_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:49 2005CHROMAT_FILE: MSMg01no312_k24.g1 PHD_FILE: MSMg01no312_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,698,281 - 20,698,383)(20,853,210 - 20,853,500)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGACAATCCGCGGAATTC
AGGAGGAAATTTCCAGTTCTTTCAAATGCTGAAGTACTTGCTTGACACTG
CCACATTTATAACTGGCCTGCTTGCTTCTGTAAATTCTTTCAGCTAGTTT
AGTTTTAATATGGCTAAAGGTGGGAGGTAACTGTGGTAATATACTTGTTT
AAATATTGGGCCATAATATGCTAAGAATACAGCCAGCGTCCATTTTCATC
TTCATTATCTTTCCTGCTTAATATTCTGACCTCCTGACTCCTTTATATCT
TTACTCAAAATGTGTGATTTCTTCTTCTTTACACATTTACTGCTTTTCTT
CCTTATTATTATATTCTACGTTCAAAATGCTCTTCTTATTTTCTCCCCTT
GTTTTTTTTTATTTTTTTCCCCCCCCCACTTATTCTATGTTAAACTGTAT
TTAATATTTGTTATTTTGTCCCCTCTCTTATTATGTTTTACCATTGTTCT
TTTTTATGAGTCCTATCCTCCTTTTCCGCCCTTGCCCGTTGTTTCGTTTT
ATCCTTTTCTCTTCTTTTCTCTTTTTTCCTCCCTTTTCACTCTGTCTTTC
TTTTTTTTCTCTCTTCTCCATTCCATTTTACCTTTTTTCTTCTTTATTAT
CCTCTATAATTTATTATTCTTTTTTCATTTTTATTTCACCTTTTTTTTTC
CTTTTCTTACCCCTACCCCGTTTTTCTCTTCTTTCTACTTCTTTTTATTT
TCACTTTTTTTTCTGCCATCCTATGTATGTTCCTCCTTTTTTCTCACCTT
AC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAATCTGTATAAATAGCGACTGAATAGAATA
GACCATCAATGGGTAGAAATGAGCCTGCTGCAAAAAGAGCCTTGGGACTC
ACAATGGATCTCAGTGGAACCCAGGAAGAGATGAATCTATGAGAAATATT
CATCTCTGGTGGAACAATAGATCGGACTCCCCAGAAATACTCCTCAATTG
AACTGTGTCACAAGAGAGGAGCCCTGTGTTTCATCTCTGTAGACTCTTGT
AATTTTGTGGCTGGAAACACGAATCTGAAGTCACTGCTAAGATCTGCTTT
GCAACTTTGCTCTTTTTTATTGCCACCCCCCCGCCTCTGGTTTTTTTTAT
ATATCATTAGCCTTTTGAACTGGGCTCATTTCCCTCATTAAGCTTCAATC
ATGTCATCTGTAAGACAGGTTAAAAGGCATGGCCCACTGTGGTTTCAGAA
GGAAATACATGAGGTGGTTTCCCAAGTCATTGAGCACTAAGCATAAACAT
AGTCAAGTCATGGTGAGGTGACATCACCCATGAACTCCCTTTTTGTGAAT
TAGAGTTTCTTTTTTTTTTCTTATAGATTTGGTTAGTAATTAGTTAAGAC
TTAGGCCTATAGAAATGACTGTGTATGTGAGTGCTTGCCATAAGGACCTG
GGAACCCCCAGGACCCAGGTAAAAAGCCCATCATGGTTGCGGGTATTTGA
TGATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_k24.b1 MSMg01no312_k24.b1 CHROMAT_FILE:
MSMg01no312_k24.b1 PHD_FILE: MSMg01no312_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:49 2005
         (103 letters)



>mm_chr19_20698081_20698583
          Length = 503

 Score =  184 bits (95), Expect = 1e-51
 Identities = 101/103 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgctgaagtacttgcttgacactgccacatttataactggcctgcttgcttctgtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 aaatgctgaagtacttgcttgacactgccacatttataactggcctggttgcttctgtaa 260

                                                      
Query: 61  attctttcagctagtttagttttaatatggctaaaggtgggag 103
           |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 attctttcagttagtttagttttaatatggctaaaggtgggag 303


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 103
Length of database: 503
Length adjustment: 8
Effective length of query: 95
Effective length of database: 495
Effective search space:    47025
Effective search space used:    47025
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
Query= MSMg01no312_k24.g1 MSMg01no312_k24.g1 CHROMAT_FILE:
MSMg01no312_k24.g1 PHD_FILE: MSMg01no312_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:49 2005
         (291 letters)



>mm_chr19_20853010_20853700
          Length = 691

 Score =  555 bits (287), Expect = e-162
 Identities = 290/291 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatctgtataaatagcgactgaatagaatagaccatcaatgggtagaaatgagcctgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aatctgtataaatagcgactgaatagaatagaccatcaatgggtagaaatgagcctgctg 432

                                                                       
Query: 61  caaaaagagccttgggactcacaatggatctcagtggaacccaggaagagatgaatctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 caaaaagagccttgggactcacaatggatctcagtggaacccaggaagagatgaatctat 372

                                                                       
Query: 121 gagaaatattcatctctggtggaacaatagatcggactccccagaaatactcctcaattg 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gagaaatgttcatctctggtggaacaatagatcggactccccagaaatactcctcaattg 312

                                                                       
Query: 181 aactgtgtcacaagagaggagccctgtgtttcatctctgtagactcttgtaattttgtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aactgtgtcacaagagaggagccctgtgtttcatctctgtagactcttgtaattttgtgg 252

                                                              
Query: 241 ctggaaacacgaatctgaagtcactgctaagatctgctttgcaactttgct 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ctggaaacacgaatctgaagtcactgctaagatctgctttgcaactttgct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)