BAC Information

Click to search

BAC

Clone NameMSMg01-313E15
Chromosome19 (Build37)
Map Location 14,499,358 - 14,499,734
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505, EG667433
Downstream geneTle4, EG433225, EG635497, Pomc-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313E15.T7 (MSMg01no313_e15.b1)MSMg01-313E15.TJ (MSMg01no313_e15.g1)
ACCAG435262AG435263
length1,2711,253
length of high quality
(start - end)
420 (29 - 448)378 (72 - 449)
definitionCHROMAT_FILE: MSMg01no313_e15.b1 PHD_FILE: MSMg01no313_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:48 2005CHROMAT_FILE: MSMg01no313_e15.g1 PHD_FILE: MSMg01no313_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGTCACTGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCT
CCCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACAT
CCTTAATCATCAGGGAACACGCCCCCAAAACAACCCTGAGATTCCACCTC
ACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTG
GCGTGGATGTGAAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCA
GGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTG
GACATAGTACTACCGGTGGATCCAGCAATACCTCTCCTGGGCATTTATCC
AGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCTTTT
TAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTTT
TTTTTTTCCCCCCCCCCCAAAANGTGGTACCTCTACACAAAAAAGAGAGA
GTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGG
ACCTGGAGAGCATCTTCCTGAGTGAGGTAACACATTCACAAAGGAACTCA
CACAATATGTACTCACTGATAAGTGGATATTATTCCTCAACCCAGGATTC
CCAAGATATAAGGTACTATTTGCTAAAATATTTGATACTCCTTATGAATG
AATACTGAACTGTGTATCCTAATGCCTCCCCTTAAAATTGCGATCAATTT
TCCTATGTCATGTATTACTTACACATTTTTTTTACTTGATATTATTTCAT
GCTCTCATTGTCTTTTCTGTCTTTTCTACTTTATCACCTTTTATTTATTA
TTTATCTTCTTTATCCTTTTCAATTCCTCCCTCAATTTCTTTGCTTTCTA
TCTAATCTCTTTTTTTTCTTATACTCTTATCCTCTTTCATCTTATTCTAT
CTTACTTTACTTCATTTTCCTTCCTCATTTTTATTTTTTCTCTTCTTCTT
TTACCTTTATTATTCCCTTTTTTCCTTTTTTTTCAATTCTTTTCTATTAA
CTCTCTTCTCATTCTTTTATTCTTACATTTTATCTCTTTACTTCCTACTT
ATTCTTTTCTACTTTTTCCTTCGCTTTTCTTTTTTCAATATTCTTTTCTA
TTATAATTCATTTTTTTACTTCTTCTCTTATATCATCTTTCTATTATCTA
ATTCATTTCATCTATCCTTATAAATTCTTCCTTCCTATCTCATTTCCTCC
TCATTCTCTTACTACTTCATT
NNNCCCTGATGCGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATCGACTTACTTATCACATATCCCGGCC
TAGTTTCCCGCTACTGTGTTGGCCCCATGGATTTAAACCAAGTTTGCTCT
CACATCTCCCGAGTTTATAATCTGGGTTTATAATTTTCTGCTAAAAGGTT
AGGTTGCCGACTTTGGCCGATCAGAGCACATTTGGAGTCCATCAAATTTT
AATTTATGAATAAACACAAGGAGACTGTCTCTCTCCTGGACATAAATCGT
GAAGTTGTTTTTGTCACCGGAGACAGAGATGTTGTAAAACTTTGGCTTTA
ATCTCTTCCCCGTTTGGCTGTCCTTGTTCCAGAGTCGGGTCTTTTAATTT
CTTGTTAAATACATTACAGCTTGTTACAGCCTCTGTTTATATTAGGGATT
TTTTTTTTTCCCCCCCCCCAANGATGNAACCATTCCATAAAAAAAAGGAA
GGGGGAGATGANAACAGTGCTTAATGGAGCAGCTTTGCTAGTGGGAAGGG
CTCTGACACTGACCAGAGCTGGTCTCAGAGGGAGCAGCTCCCTTGCCACG
CCGCCTTTTAGCAACCTTTAAAAAACGATCTACGCTTGTTTACACAAAAG
TGTTTCAAGCCCTCTTCTGCTATAAATTGTGTATGGCTCAGCCTGTGCAT
TAGGACTCATGCTAAATGTCTTTATCTGGAAAGATAAAAGAAATATTTAC
GATTCCTCTGAAATGGATTTGCCTTCCCTTGGCTTTGGCTAATAATACGA
TCTACTAAAGGAACCGCTTAAAAACTGCTGTTTATCTTACAAACAGTACC
CTAAGGCCTCTGCTATCTTCTAACCGCTAATCGTCTATGATTAATTAGGC
TTCGAGATCTTACACATTTATCACTTCTTCTATTTTTTCCCCCTCTTTAA
ATGTTTTCTATATAAAATTTTTTCTGTTTCTTAATATTATCTCGATTATT
TTCATATTTTCTAATATGATTTTTATACTTCTCATTGCTTCCTTTCTTCT
CTCTAATTTCTCTCCTTTAACTTTTCCTCTTTTTATTTTTCTTCATTTTC
TTTGTTATACTTCCCATCGCCTTTCTTTTTATTATCATATCTTCAACATT
TCTCTATTCTATCTATTCTATTTTGTTATCTCCCCTTTTACTTACCTTCT
TATATTTTATATTTTATCACGTTTCTCTTCGACACTTTTTATATTGCTTT
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_e15.g1 MSMg01no313_e15.g1 CHROMAT_FILE:
MSMg01no313_e15.g1 PHD_FILE: MSMg01no313_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:48 2005
         (378 letters)



>mm_chr19_14499158_14499935
          Length = 778

 Score =  652 bits (337), Expect = 0.0
 Identities = 367/381 (96%), Gaps = 8/381 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcgacttacttatcacatatcccggcctagtttcccgctactgtgttgg----cccca 56
           |||||||||||||||||||||||||||||||||||||||||||||||||||        |
Sbjct: 577 catcgacttacttatcacatatcccggcctagtttcccgctactgtgttggtatt----a 522

                                                                       
Query: 57  tggatttaaaccaagtttgctctcacatctcccgagtttataatctgggtttataatttt 116
           |||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 521 tggatttaaagcaagtttgttcccacatctcccgagtttataatctgggtttataatttt 462

                                                                       
Query: 117 ctgctaaaaggttaggttgccgactttggccgatcagagcacatttggagtccatcaaat 176
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 461 ctgctaaaaggttaggttgccgactttggctgatcagagcacatttggagtccatcaaat 402

                                                                       
Query: 177 tttaatttatgaataaacacaaggagactgtctctctcctggacataaatcgtgaagttg 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tttaatttatgaataaacacaaggagactgtctctctcctggacataaatcgtgaagttg 342

                                                                       
Query: 237 tttttgtcaccggagacagagatgttgtaaaactttggctttaatctcttccccgtttgg 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tttttgtcaccggagacagagatgttgtaaaactttggctttaatctcttccccgtttgg 282

                                                                       
Query: 297 ctgtccttgttccagagtcgggtcttttaatttcttgttaaatacattacagcttgttac 356
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 281 ctgtccttgttccagagtcgggtcttttaaaatcttgttaaatacattacagcttgttac 222

                                
Query: 357 agcctctgtttatattaggga 377
           |||||||||||||||||||||
Sbjct: 221 agcctctgtttatattaggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)