Query= MSMg01no317_h13.b1 MSMg01no317_h13.b1 CHROMAT_FILE:
MSMg01no317_h13.b1 PHD_FILE: MSMg01no317_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:29 2005
(626 letters)
>mm_chr19_50119954_50120979
Length = 1026
Score = 1195 bits (618), Expect = 0.0
Identities = 624/626 (99%)
Strand = Plus / Minus
Query: 1 ctggccttgaactgacagagatctacctatccttgatgtcccagtgcttacattaaaggc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 917 ctggccttgaactgacagagatctacctatccttgatgtcccagtgcttagattaaaggc 858
Query: 61 atgaaccattatgcctggatctcttatgtagcgatgagaaaatgataaatgactaacttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 atgaaccattatgcctggatctcttatgtagcgatgagaaaatgataaatgactaacttt 798
Query: 121 ttcaacagtaaagtattttaacatagttgaatggtgagtgcaacatgtctgattccccta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ttcaacagtaaagtattttaacatagttgaatggtgagtgcaacatgtctgattccccta 738
Query: 181 tctgaaacagtatgctaaatttatgttatagaggaataaaaaactcatcggtcacttacg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tctgaaacagtatgctaaatttatgttatagaggaataaaaaactcatcggtcacttacg 678
Query: 241 taaaatgtacatgtcaagagagtaacctctgcagcattttattacatctctacatggatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 taaaatgtacatgtcaagagagtaacctctgcagcattttattacatctctacatggatt 618
Query: 301 ttcgtcagatggaatgtttattagctggtgctaaattgccagctcacacgtgtgcacttc 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 617 ttcgtcagatggaatgtttattagctggtgctaaattgccagctcacatgtgtgcacttc 558
Query: 361 taagtcagttcattgagaaggatttatcatctggccaaggaacaccacatgtgaactggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 taagtcagttcattgagaaggatttatcatctggccaaggaacaccacatgtgaactggt 498
Query: 421 gaccttgttccttcatggctttgcttgcagaagggacattaagtacatacaagtattgat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gaccttgttccttcatggctttgcttgcagaagggacattaagtacatacaagtattgat 438
Query: 481 tttcttatttcacaaatgctcctgaagctcttagcttgaccttctgcagcacagggccaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tttcttatttcacaaatgctcctgaagctcttagcttgaccttctgcagcacagggccaa 378
Query: 541 caatttgtcaatgataatatgtaatttcagaatatttgctcaggttgaattcttttctca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 caatttgtcaatgataatatgtaatttcagaatatttgctcaggttgaattcttttctca 318
Query: 601 caagttttgagtaatacctttttagt 626
||||||||||||||||||||||||||
Sbjct: 317 caagttttgagtaatacctttttagt 292
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no317_h13.g1 MSMg01no317_h13.g1 CHROMAT_FILE:
MSMg01no317_h13.g1 PHD_FILE: MSMg01no317_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:29 2005
(601 letters)
>mm_chr19_49950864_49951865
Length = 1002
Score = 967 bits (500), Expect = 0.0
Identities = 575/604 (95%), Gaps = 14/604 (2%)
Strand = Plus / Plus
Query: 1 tttcatgtgtcagaatgttttcagtacaacaaagctgtgttttaacgcaagatttaatga 60
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 210 tttcatgtgtcagaatgttttcagtacaacaaagctgtgttttaaggtgagatttaatga 269
Query: 61 agacattttcataatcaataagacattttgctgggtttttgtttgttggttttttttttt 120
|| | || |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 270 ag------taat-atcaataaaacattttgctgggtttttgtttgttg--attttttttt 320
Query: 121 gctgttgttctcattttacccattattgtatccatgtaaaattaataaaaatgttattaa 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgttgttcttattttacccattattgtatccatgtaaaattaataaaaatgttattaa 380
Query: 181 tataacagaatggaaaagcctcagaaaattcaaaaattagcactatagatttaagaaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tataacagaatggaaaagcctcagaaaattcaaaaattagcactatagatttaagaaaat 440
Query: 241 atttatgatgtaagt-aaaaaaacataattggaaaatg-aaaaaaatacctgttatattt 298
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 atttatgatgtaagtaaaaaaaacataattggaaaatgaaaaaaaatacctgttatattt 500
Query: 299 agcgcactttatttaatactgtgcaacataaatatcatgtatgtgacacacattaacatt 358
|| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 501 agtgcaatttatttaatactgtgcaacataaatatcatgtatgtgacagacattaaaatt 560
Query: 359 aaagctatataactgttaataagtattaaaaaaaatgaattacctaaagacaaaatgttc 418
||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||
Sbjct: 561 aaagctatataactgttaataagtatt-agaaaaatgaattacctcaagacaaaatgttc 619
Query: 419 agtatttttaattggctttatataat-gtatccatagtttcataattctgtggttagact 477
|||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||
Sbjct: 620 agtatttttaattggctttata-aattgtatccatactttcataattctgtggttagact 678
Query: 478 gtagtatactacaggtaaaacacttcagaatggcttcaaatatggaaaaataagctatca 537
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gtagtatactacaggtaaaagacttcagaatggcttcaaatatggaaaaataagctatca 738
Query: 538 taagcaatttgcagttgaagcatttagtcaacttttactggtctatgagaattaccattt 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 taagcaatttgcagttgaagcatttagtcaacttttactggtctatgagaattaccattt 798
Query: 598 aaca 601
||||
Sbjct: 799 aaca 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1002
Length adjustment: 10
Effective length of query: 591
Effective length of database: 992
Effective search space: 586272
Effective search space used: 586272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
