Query= MSMg01no318_j15.b1 MSMg01no318_j15.b1 CHROMAT_FILE:
MSMg01no318_j15.b1 PHD_FILE: MSMg01no318_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:49 2005
(295 letters)
>mm_chr19_54862347_54863041
Length = 695
Score = 522 bits (270), Expect = e-153
Identities = 285/290 (98%)
Strand = Plus / Plus
Query: 5 taggcaccatgtcacaaggtgaggtcgagtaagtggaatgagtagacacaaggggcaccc 64
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 205 taggcaccatgtcacaaggtgaggttgagtaagtggaatgagtagacagaaggggcaccc 264
Query: 65 atgaccctccagtctggctatggatagcctgctggcctctttcttcggctgatatgcttg 124
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 265 atgaccctccagtctggctatggatagcctgctggcctctttcttgggctgatatgcttg 324
Query: 125 ccttccaaaacttgacttagcagactctctgtatcctcaggcctttagaacaccggcact 184
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 325 ccttccaaaacttgacttagcagactctctatatcctcaggactttagaacaccggcact 384
Query: 185 actctgcagagcaccgggcactactctctgtgggcttgattccatgacattctcaacctc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actctgcagagcaccgggcactactctctgtgggcttgattccatgacattctcaacctc 444
Query: 245 aggcatcctgctgcccctggcatgaatacccagaccatggtattcatttt 294
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggcatcctgctgcccctggcatgaatacccagaccatggtattcatttt 494
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space: 196196
Effective search space used: 196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no318_j15.g1 MSMg01no318_j15.g1 CHROMAT_FILE:
MSMg01no318_j15.g1 PHD_FILE: MSMg01no318_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:49 2005
(293 letters)
>mm_chr19_55027653_55028345
Length = 693
Score = 397 bits (205), Expect = e-115
Identities = 264/299 (88%), Gaps = 28/299 (9%)
Strand = Plus / Minus
Query: 1 ttcttgggtagggactcacataggtagtaataattcttattttccctatcaaacataaac 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 637 ttcttggctagggactcacataggtagtaataattcttattttccctatcaaaaataaac 578
Query: 61 cataaaacaccatcatacttaaatacaatgcctcttgaggtgtgttttatcttttgtgtg 120
|||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 577 cataaagcaccatcatacttaaatacaatgccttttgaggtgtgttttgtcttttgtgtg 518
Query: 121 tgtgtgtgtgtatatatatatatatatatatatatatatccacagttgacactgctttat 180
|| | |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 517 tg---------------a-atatatatatatatatatattcacagttgacactgctttat 474
Query: 181 gagggtttaagtattccataataatcaaagacacttaggcagtttttcttcctgtaagta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gagggtttaagtattccataataatcaaagacacttaggcagtttttcttcctgtaagta 414
Query: 241 atttcagctaa----t--attttttccagacttaagtactgcatttgggcaagaaaata 293
||||||||||| | | ||||| ||||||||||||||||||||||||||||
Sbjct: 413 atttcagctaagaactcaa------ccagagttaagtactgcatttgggcaagaaaata 361
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
