BAC Information

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BAC

Clone NameMSMg01-321P10
Chromosome19 (Build37)
Map Location 25,070,666 - 25,070,944
singlet/doubletsinglet
Overlap genenone
Upstream geneGm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1
Downstream geneDock8, LOC100042503, Ankrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321P10.T7 (MSMg01no321_p10.b1)MSMg01-321P10.TJ (MSMg01no321_p10.g1)
ACCAG440793AG440794
length750773
length of high quality
(start - end)
279 (66 - 344)84 (73 - 156)
definitionCHROMAT_FILE: MSMg01no321_p10.b1 PHD_FILE: MSMg01no321_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:49 2005CHROMAT_FILE: MSMg01no321_p10.g1 PHD_FILE: MSMg01no321_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAAATCCGCGGAA
TTCTATTAGTATGTGTTTACTGATGGTGAGATACCCTTCCAAACCAAGAA
AGAGCGCTGGCAAACTGAGAGAAGTTCTTCCTTGCGTGGGACATAAAAAC
TTGCTTCAATCCCTGAAGGATGGAGAGAACTGTTGGTAATGTAGGCTGAA
GAGAGCAGGAGGAATAACAGATAGGAAGGCCCCAGAAGAAAGACCACTGT
CTTCTCGGTGATGAGTTGTGGCTCTGCCCTGCTTTGACTGAGGCAGGCCT
GTCAGTCACTGAGGGGAGGATTCACTTGATCATAGAGGCTGCCGATAAAC
TACTAAGGGTAGTTGGTAGGTATGTACGCCAGTGGCAGAGACCAATTAGA
CCAGAATAAGCAAGGCGCCCCCCCCTGGGATCCGTTTAAGGAGCGGCTTT
TGTTATCCTGACATGAACCCATGATCCAGGATGGAATCCGTACTAACACT
GGTATGCTTAAGAAGAAGTGATACTTTATACTGAATGTGTGATCGTCTCT
GGAAATAGGTTATAGCTGAAAGGTAAAGGTGATTTGTAAGCTACTGTTGA
CTCTTTTCTTTAGTCCAGATTGCATTTTGCTTGTGATGGCTTCTCCAAGT
AGACCGTTTCTGATCTTTAGACATATTACTTTAATCCTTTCACCCAATCC
AGATTTCCCTAAGTGAATCCTGGGCACTCTACCCTCACTTTATATGTATA

ATGAAGTGCGAGGCCTGGCGGCCGCCCGGCCTACTCACCCGGGTGAACTA
TAGAAGGTTTCCGACACACACCAGGACCCGGAGGACACCTCCCAGCAGGC
TGTCTTTACAGTCCAGGCGCGGAGCTTGCCTGGGGGGTGGGGGGTGGGTG
GAAGAACAGCATCTCTGAGTAAGGCTGGAGGCAGGAGAGGCAGCTGCTGA
TTATCTTATAGGACTGATGCGCCTTCTCACCATAAGGAGGCAAGTGCTCT
GTGACCCGCCATCTACATCGTTCATTAACCACCATGAGAGCGGAAGCCCT
CGTTCCCCAAGACTTTTTTTTTTAACTAACTGACCCGATACCCGTGCCCA
AATAATTTTTTTTTTCCCCCCCCCCCCCCCCCTCTTCCTCCAAGTTGAGA
GAAGAGAAGAGCCCCCCCCCCAACAAAAAAAAAATGAATTCCTGTCGACG
CTTTGTTACCACCTTCTATCTCCAATCACAACAACCCTTTCGCCGCTATA
TACAACTTCCCAACTGGTCACTCTACCCTCCTCCCGTATATAACCCCATA
CATTACTTTTCCATATATACTAATTTCTCTTCCCACAACGCCATACACTT
TCTCGCTCTCGGTATAACTGCCTCTTTGCTTTCCCCTATCCCCCTTCCTT
ACTACCTTCTTTCTTTTTTGTTCTGTCTTCCGTCTTACATCTCACCAATA
AACTCCCCACTTCTTCTCCCCCCTTTTCCCACCTCCTTTTCTTTTTATTT
CCCTATCCCGTACCATCTCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_p10.b1 MSMg01no321_p10.b1 CHROMAT_FILE:
MSMg01no321_p10.b1 PHD_FILE: MSMg01no321_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:49 2005
         (279 letters)



>mm_chr19_25070466_25071144
          Length = 679

 Score =  478 bits (247), Expect = e-139
 Identities = 271/279 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttactgatggtgagatacccttccaaaccaagaaagagcgctggcaaactgagagaagt 60
           ||||||||  ||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tttactgacagtgagatacgcttccaaaccaagaaagagcgctgacaaactgagagaagt 260

                                                                       
Query: 61  tcttccttgcgtgggacataaaaacttgcttcaatccctgaaggatggagagaactgttg 120
           ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 261 tctcccttgcgtgggacataaaaacttgcctcaatccctgaaggatggagagaactggtg 320

                                                                       
Query: 121 gtaatgtaggctgaagagagcaggaggaataacagataggaaggccccagaagaaagacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaatgtaggctgaagagagcaggaggaataacagataggaaggccccagaagaaagacc 380

                                                                       
Query: 181 actgtcttctcggtgatgagttgtggctctgccctgctttgactgaggcaggcctgtcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgtcttctcggtgatgagttgtggctctgccctgctttgactgaggcaggcctgtcag 440

                                                  
Query: 241 tcactgaggggaggattcacttgatcatagaggctgccg 279
           |||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 tcactgaggggaggattcacttgatcatggaggctgccg 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)