BAC Information

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BAC

Clone NameMSMg01-327D14
Chromosome19 (Build37)
Map Location 60,768,408 - 60,768,715
singlet/doubletsinglet
Overlap genenone
Upstream geneRab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik, Prlhr, 2700078E11Rik
Downstream geneNanos1, Eif3s10, 1810055E12Rik, Sfxn4, Prdx3, Gprk5, LOC671322, BC029127, LOC100043112, EG547091, LOC433261, EG633057, Csf2ra, LOC100043120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327D14.T7 (MSMg01no327_d14.b1)MSMg01-327D14.TJ (MSMg01no327_d14.g1)
ACCAG444639AG444640
length759810
length of high quality
(start - end)
377 (46 - 422)308 (77 - 384)
definitionCHROMAT_FILE: MSMg01no327_d14.b1 PHD_FILE: MSMg01no327_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:05 2005CHROMAT_FILE: MSMg01no327_d14.g1 PHD_FILE: MSMg01no327_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAACCGCGGAA
TTCCTGATCTCTCTCCACTTTTAACATGAAGGGGTATTGTATTTTGTCAA
ATGCTTTTTCAGAATCTAGGGAGATGATAAAGAAAGAAATTAAAGACTTC
CCGGAATTTAATGAAAATGATGACACAGCATACCCAAACTTATGGGACAC
AATGAAAGTGCTAAGAGGAAAATTCATAGCACCAAGTGCCCTGGTAAAGA
AATTGGAAAGATCCTACACTAGCAACTTAATAGCACATCTGAGAGCTCTA
GAACAAAAAGAAGCAAACACACCCAAGATGAGTGGGCAGCAGGAAATTGT
CAAACTCAGGGATAAAATCAACCAAATAGAAGCAAAGAGAATAATACTAA
GAATCAACAAAAACAAAAGCCGCCCTCTTTGAGAGAATCAACAAGATAGA
TAAACCCCTAGCCAAACTAACTAAAGGTCCAGAGATAGTATCCAGATTAA
CAAAATTATAAGTGAAATAGGAGACATAACAACCGATACTGACGAAATTA
TCAAATAATCCTCAGATTCTACTACTAAAGCTTATATTCCACAAAATTGG
AAAATCTATATGAAATGGATCATTTTCTAGATCTATACCTCCTAACAAAG
TTAAATCACGATCATGTATTCTATCTAAACTGGCCCATATTCCTTACGGA
AATAGAGGTCATTATTAATCCCCCTACCCCATATATGCCTATTTATATTT
TATTATACN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTATTCTTTCCAAGCCTCTTTAA
GGCCAGAGACCATAGTGGGAAGCAGCCTGGGTATCCAGGACAGGGATGAG
AAGGAAATGAATTGGATCCTTATGTTCTGAAGTAGATGCCCAGGGAATGG
AGGCCACTCCACAGGGACAAGGCTAAGTCTGGACCACAATGGCCCAAGTG
CAAGTGATACTCCAGGTCTACCAGAGACATGTTGCTCATCTTGGGCCATT
AAGTTTCAAATGCTACCACTGCTGTTGCTATGGTAGGAACACTGTGGGGG
AGAGGACTGGACCCTAGAGGACATTGATGGTTTAACATTCTTTGTGGTCC
CTGGAAAGAGCGTGATGTCATACCCCCCCTTCCCCAATTGCTCTGCAAAA
GCTTGTGTTAGGACAGGTAGTCCTGGCGCTGACATGAATGTTTTGTCTTC
TTGTATTTATCCTTTATATCTCTCTGTTCTGTCCTCTGATTTCACCCCTA
TGTCTGACTTGTTCTTCTTATGCCTTGGCCCCCTGTATCTATCTCCATTT
TGTTTTGGCTTAATGTCTGTATGCCTCTCTTCATTTTCCGTTCTATGATT
GACCCTTTTACATTTTGTTTTTTTGTATTCTCCTATCTTCCTGTTGGCTT
TTGTAGACTTTTTTAGTATCTTACTTCCCTATCTATCTGTTATTTCTCAT
TCTTGATCTACTCATCCTGTATTATTATTGTTCTCCACTCTTCTTTCCTT
TTAACTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_d14.g1 MSMg01no327_d14.g1 CHROMAT_FILE:
MSMg01no327_d14.g1 PHD_FILE: MSMg01no327_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:05 2005
         (308 letters)



>mm_chr19_60768208_60768915
          Length = 708

 Score =  588 bits (304), Expect = e-172
 Identities = 307/308 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctattctttccaagcctctttaaggccagagaccatagtgggaagcagcctgggtatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tctattctttccaagcctctttaaggccagagaccatagtgggaagcagcctgggtatcc 449

                                                                       
Query: 61  aggacagggatgagaaggaaatgaattggatccttatgttctgaagtagatgcccaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aggacagggatgagaaggaaatgaattggatccttatgttctgaagtagatgcccaggga 389

                                                                       
Query: 121 atggaggccactccacagggacaaggctaagtctggaccacaatggcccaagtgcaagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atggaggccactccacagggacaaggctaagtctggaccacaatggcccaagtgcaagtg 329

                                                                       
Query: 181 atactccaggtctaccagagacatgttgctcatcttgggccattaagtttcaaatgctac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 atactccaggtctaccagagacatgttgctcatcttgggccattaagtttcaaatgctac 269

                                                                       
Query: 241 cactgctgttgctatggtaggaacactgtgggggagaggactggaccctagaggacattg 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cactgctgttgctatggcaggaacactgtgggggagaggactggaccctagaggacattg 209

                   
Query: 301 atggttta 308
           ||||||||
Sbjct: 208 atggttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)